Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9c14
         (180 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         19   7.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    19   7.2  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    19   7.2  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    19   7.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    18   9.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    18   9.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    18   9.6  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -1

Query: 36  DLEYYNDKIFI 4
           D++ ++DKIF+
Sbjct: 68  DIDQWHDKIFV 78


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 136 ILIVFLVFSVCEG-SLGLSILVSII 65
           +L+ +L     E  +LG+SIL+S++
Sbjct: 252 VLVFYLPAEAGEKVTLGISILLSLV 276


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -1

Query: 36  DLEYYNDKIFI 4
           D++ ++DKIF+
Sbjct: 68  DIDQWHDKIFV 78


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -1

Query: 36  DLEYYNDKIFI 4
           D++ ++DKIF+
Sbjct: 68  DIDQWHDKIFV 78


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -3

Query: 130 IVFLVFSVCEGSLGLSILVSIIRSH 56
           I  ++  VC G+  L+ ++  +R H
Sbjct: 234 ITRVIPQVCSGNCKLNDILLTVRPH 258


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
          protein.
          Length = 411

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -1

Query: 33 LEYYNDKIFI 4
          ++ +NDK+FI
Sbjct: 56 MQIWNDKVFI 65


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -3

Query: 130 IVFLVFSVCEGSLGLSILVSIIRSH 56
           I  ++  VC G+  L+ ++  +R H
Sbjct: 234 ITRVIPQVCSGNCKLNDILLTVRPH 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,118
Number of Sequences: 438
Number of extensions: 244
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 39
effective length of database: 129,261
effective search space used:  2585220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)