Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9c11
         (768 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    24   1.5  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    23   3.6  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    23   3.6  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   6.2  

>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 18/80 (22%), Positives = 28/80 (35%)
 Frame = +2

Query: 251 YFDGRQEDPYRPVGVEKIGERTLATAYTAIRIGYYATPLICLYIIQRGFLSMEEVKTLMR 430
           +F GR++D        +     +ATA   IR+     P    Y + R   +    + L  
Sbjct: 117 FFQGREQDVEIKEVFSRFSNDVIATAAFGIRVNSVQEPNNEFYAMGRSLTTFSAFQILKI 176

Query: 431 FFGGIGCIATVFFVMRAYGR 490
           F   +      FF  R   R
Sbjct: 177 FLAHLVPKIAEFFEYRVLPR 196


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 575 KYDFDFSAWPVTFTADPEERQESWLQNHP 661
           +Y F  S W V   ADPE  +  ++  HP
Sbjct: 32  RYKFHNSRWMVAGKADPEMPKRMYI--HP 58


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 575 KYDFDFSAWPVTFTADPEERQESWLQNHP 661
           +Y F  S W V   ADPE  +  ++  HP
Sbjct: 32  RYKFHNSRWMVAGKADPEMPKRMYI--HP 58


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 21  GGARYLRGRTAAPRIFLFQLSRVKRKIQ 104
           G + YLR    + R+F +QL+ + +KI+
Sbjct: 264 GLSPYLRFGCLSTRLFYYQLTDLYKKIK 291


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,283
Number of Sequences: 336
Number of extensions: 4155
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)