Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9c11
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ...    28   1.7  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    27   3.9  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    26   5.2  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    25   9.0  

>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 479 AYGRSYSPKYLKFIDTLDSPMDDKNAYL 562
           AY R++   Y +F+D++DS  +++N  L
Sbjct: 81  AYTRAFLKSYFRFLDSIDSGHNERNEAL 108


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -3

Query: 598 SGEVEIVFPDRLQIRILVVHGRVQSVNEFQIFRTVRSSICSHYEENSSY--TADASEEAH 425
           +G ++++ P+  QI +++  G      EFQ  R   +  C +YE+N  Y     A  E+ 
Sbjct: 83  NGAIKLLPPEGWQIPVVLDQGAF----EFQSKRQCLNKGCLNYEKNYDYFKKLKAFHESR 138

Query: 424 *SFYFFH 404
              YF+H
Sbjct: 139 -GLYFYH 144


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 373 PIHNPTWLSFNGRSKNFNA 429
           P HNPT    NG S N+NA
Sbjct: 283 PTHNPTSSYGNGASTNYNA 301


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 301 LFNSDRAIRILLSSIEVNLVESRRKH 224
           LFN D  ++I++ +I  N  ESR +H
Sbjct: 145 LFNMDALLQIVMFNIYGNQYESREEH 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,318,073
Number of Sequences: 5004
Number of extensions: 70796
Number of successful extensions: 172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)