Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9c11
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660...    31   1.0  
05_04_0256 - 19465636-19466709,19467649-19467765,19468168-194682...    31   1.3  
03_03_0039 - 13986844-13986907,13987219-13987273,13987492-139876...    28   9.4  

>06_03_0785 - 24563310-24565004,24565302-24565384,24565484-24566039,
            24566397-24566513,24566565-24567131,24568632-24568702,
            24569833-24569903,24570270-24570441,24571229-24572212,
            24573128-24574808
          Length = 1998

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -1

Query: 669  FAKGWFCSQLSCLSSGSAVKVTGQAEKSKSYFLI 568
            F K WFCS+LS L+ G   K+ G     KSY L+
Sbjct: 1408 FNKSWFCSKLS-LTHGILAKLKGVRVLDKSYALM 1440


>05_04_0256 - 19465636-19466709,19467649-19467765,19468168-19468279,
            19469019-19469167,19469378-19469449,19469544-19469609,
            19471945-19472073,19474539-19474647,19475225-19475304,
            19475408-19475533,19475607-19475657,19475738-19475920,
            19476019-19476105,19476184-19476294,19476692-19476796,
            19477513-19477678,19477769-19477941,19478022-19478094,
            19479472-19479655,19479759-19480203
          Length = 1203

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
 Frame = +2

Query: 236  RLYKIYFDGRQEDPYRPVGVEKIGERTLATAYTAIRIGYYATPLICLYIIQRGFLSMEEV 415
            RL K+  +  +E   R   + K+G+ ++A+ +TA     +A+    L II++G  ++  V
Sbjct: 917  RLQKMMDEMNEESDGRSAPIVKLGDASMASPFTA----KHASVAPTLDIIRQGRSTL--V 970

Query: 416  KTLMRF-FGGIGCIATVFFVMRAY 484
             TL  F   G+ C+AT + +   Y
Sbjct: 971  TTLQMFKILGLNCLATAYVLSVMY 994


>03_03_0039 - 13986844-13986907,13987219-13987273,13987492-13987606,
            13987652-13987774,13987962-13988015,13988352-13988411,
            13988522-13988584,13988790-13988863,13989177-13989261,
            13989376-13989456,13989764-13989856,13990275-13990339,
            13990407-13990482,13990570-13990635,13991094-13991153,
            13991233-13991322,13991755-13991817,13992502-13992625,
            13993031-13993271,13993355-13993624,13993715-13994089,
            13994178-13994381,13994455-13995136,13995231-13995279,
            13995362-13995488,13995564-13996258,13996718-13996965
          Length = 1433

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 349  LLCNSIDLPIHNPTWLSFNGRSKNFNALLRRHR 447
            LL   + +P  +P WL+  GR K FNA L++ R
Sbjct: 1131 LLVGLLFIP-ESPRWLANTGRVKEFNASLQKLR 1162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,286,591
Number of Sequences: 37544
Number of extensions: 441346
Number of successful extensions: 1050
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)