Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9c11
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88180-5|AAB42299.1|  340|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    29   3.6  
Z73105-2|CAA97439.2|  803|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z12017-8|CAA78050.3|  371|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AF098997-14|AAK71402.1|  321|Caenorhabditis elegans Serpentine r...    28   8.4  

>U88180-5|AAB42299.1|  340|Caenorhabditis elegans Hypothetical
           protein T27A3.6 protein.
          Length = 340

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 431 FFGGIGCIATVFFVMRAYGRSYSPKYLKFIDTLDSPMDDKNAYLKAIRKYDFD 589
           +F  +   A V  + RA  RS +   L FID  +S  DDKN  +   R+   D
Sbjct: 143 YFVNVAFPAYVRHLERARQRSRTDSRLTFIDVSESKFDDKNKSIVNFRQQILD 195


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 595 GEVEIVFPDRLQIRILVVHGRVQSVNEFQIFRTV-RSSICSHYEE 464
           G + + + +RLQ  ++ +  R   VN  QI+ ++ RS+ C+ Y E
Sbjct: 158 GSMGLRYAERLQAALIPIINRFDCVNSSQIYSSMSRSAFCAGYLE 202


>Z73105-2|CAA97439.2|  803|Caenorhabditis elegans Hypothetical
           protein R13.4 protein.
          Length = 803

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 545 DKNAYLKAIRKYDFDFSAWPVTFTADPEERQESWL 649
           D + +LK   + D  FS WPVT + DP  + E ++
Sbjct: 363 DASDFLKVSPQTDVLFSIWPVTKSNDPNIQYEVYI 397


>Z12017-8|CAA78050.3|  371|Caenorhabditis elegans Hypothetical
           protein R08D7.4 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 521 DTLDSPMDDKNAYLKAIRKYDFDFSAW 601
           DT DS  ++  A ++++   DFDFS W
Sbjct: 236 DTEDSSANNNQATVRSLNWCDFDFSEW 262


>AF098997-14|AAK71402.1|  321|Caenorhabditis elegans Serpentine
           receptor, class i protein32 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 213 CGDACFLLDSTRFTSMDDKRIRIARSELKR 302
           CG A     +  F  M D + R++RS LKR
Sbjct: 205 CGGAAIFTTADMFRMMKDLQTRVSRSSLKR 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,179,457
Number of Sequences: 27780
Number of extensions: 384609
Number of successful extensions: 983
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)