Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9c11
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    25   1.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   7.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   7.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.5  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +1

Query: 310 KDPCNGLYRYQNRLLCNSIDLPIHNPTWLSFNGRSKNFNALLRRHRLYSY 459
           +DP    Y++ N     S      N TWL  N   K+ N   ++   YS+
Sbjct: 419 RDPERTPYQWDNS---TSAGFSQTNKTWLPVNENYKSLNLAAQKREYYSH 465


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 21  GGARYLRGRTAAPRIFLFQLSRVKRKIQ 104
           G + YLR    + R+F +QL+ + +KI+
Sbjct: 268 GLSPYLRFGCLSTRLFYYQLTDLYKKIK 295


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = -3

Query: 550 LVVHGRVQSVNEFQIFRTVRSSICSHYEENSSY 452
           + +HG VQS +++ +   V ++   ++E    Y
Sbjct: 107 VTMHGTVQSYDKYDLLENVNNAARINWEYLDKY 139


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 684 SMFAHFAKGWFCSQLSCLSSGSAVKVTGQAEKSKSYFLI 568
           S+ A  A+   CS   CL S   + + G   +SK   L+
Sbjct: 29  SLHAGNAEKTLCSGQVCLGSVMQLPIHGTEPRSKEEILL 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,589
Number of Sequences: 438
Number of extensions: 5325
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)