Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9c09
         (523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378...    29   3.0  
02_05_0746 - 31451303-31453168,31453243-31453357,31454296-314543...    28   4.0  
07_03_1230 + 25044126-25044683                                         27   6.9  
05_05_0304 - 23965842-23965849,23965940-23966107,23966303-239665...    27   9.1  

>03_04_0013 +
           16436438-16436536,16437257-16437742,16437791-16437826,
           16437835-16438323,16438951-16439622
          Length = 593

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 163 KMGAKWCNMAKACNHDRVPICGISHAGDV 249
           +MG  W    K C+ D  P C +   GDV
Sbjct: 541 EMGDSWSYRCKECDFDLHPKCALEEKGDV 569


>02_05_0746 -
           31451303-31453168,31453243-31453357,31454296-31454351,
           31455057-31455138,31455484-31455517,31455912-31456016,
           31456108-31456387
          Length = 845

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 4   DYVGSFDVWLLRGLLGTMVSRNMVLYLLCFMILTV 108
           DY G F  WL+ GL G +    M++  +C++IL +
Sbjct: 126 DYAG-FGDWLIIGLGGRVWPHGMLIGRICYIILLI 159


>07_03_1230 + 25044126-25044683
          Length = 185

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 130 ERDNEDIAMGRKMGAKWCNMAKACNH 207
           ER   ++ + R  G++WCN+    +H
Sbjct: 69  ERHEHELTLTRLTGSRWCNVCDVISH 94


>05_05_0304 -
           23965842-23965849,23965940-23966107,23966303-23966575,
           23966676-23967039,23967762-23968133
          Length = 394

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 127 QERDNEDIAMGRKMGAKWCNMA 192
           +E +N+ I + RKMG KW  MA
Sbjct: 101 KEEENKIINLHRKMGNKWSRMA 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,009,222
Number of Sequences: 37544
Number of extensions: 257228
Number of successful extensions: 590
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)