Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9c08
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.7  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   8.7  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   8.7  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   8.7  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 7   NGPKWPKGYHKKIEVG 54
           N P W  G H ++ VG
Sbjct: 351 NVPNWVMGNHDRVRVG 366


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 434 QKKNY*DNNKNCLQRPVRNKQNKNSNSGFYYNN 532
           Q  N  ++NK    R   NKQN N  +G   N+
Sbjct: 480 QNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQND 512


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +1

Query: 286 TINAEHVLTALDRLGFSDYTIEAEAVLKDCKAVAA 390
           T+N E + +    L   D+T +   +++ C + AA
Sbjct: 70  TLNVEKLESGTRELTPDDFTEDVHEIIEQCVSKAA 104


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +1

Query: 286 TINAEHVLTALDRLGFSDYTIEAEAVLKDCKAVAA 390
           T+N E + +    L   D+T +   +++ C + AA
Sbjct: 70  TLNVEKLESGTRELTPDDFTEDVHEIIEQCVSKAA 104


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 672 NKTVIILNNNLIK 634
           +KTV ILNN +I+
Sbjct: 201 SKTVFILNNEIIR 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,164
Number of Sequences: 438
Number of extensions: 2818
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)