Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9c06
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 29 0.71
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 29 0.94
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 28 1.2
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 28 1.2
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 27 2.2
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 27 2.2
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 27 2.2
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 2.9
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom... 27 2.9
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 27 2.9
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 27 3.8
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 26 5.0
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 26 6.6
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 8.8
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 25 8.8
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 29.1 bits (62), Expect = 0.71
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 309 RVVKEYNGETVVENPTDRLTEDINEKENEFEPKSNHDFFEDPS 437
RV K NGE V N D ED N K +E + +++ E PS
Sbjct: 39 RVGKNDNGEYVFTNKEDINMEDPNVKTDETKVETSESTSEQPS 81
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 28.7 bits (61), Expect = 0.94
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
Frame = +3
Query: 99 DRGLQTQLNMNREVNKT--ETIIDDNANDVLKGSNNKSDSKAESRDVLKPRSPKNIEDSL 272
D GL LN+ + I+D AN+ + + NK + ES D+L + D
Sbjct: 88 DSGLNYGLNIRVASSSAADNEIVDWKANNSNEKAQNKIATNKESTDILPEEVQLVLNDLN 147
Query: 273 SPIEAIDFGNTARVVKEYNGETVVENPTDRLTEDINEKENEFEPKSNHDFFEDP 434
+++ + N + T V N D +DI+E EP + D+ E P
Sbjct: 148 DDVKSANSANLQPIT------TNVVNEKDAYRKDIDELP---EPSNMKDYSEIP 192
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 481 ILMSSYSTKIFKVNIRMSITMTRTISFLMRLDLKGV*TLSRRRIARSPFPAT 636
I SY + ++ + T I+ +M L +K + +L+R ARSPF AT
Sbjct: 463 IKFGSYCVSNLSIFPKLLLEKTSVINLIMALYVKLLKSLARDFPARSPFEAT 514
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 28.3 bits (60), Expect = 1.2
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Frame = +3
Query: 129 NREVNKTETIIDDNANDVLKGSNN--KSDSKAESRDVLKPRSPKNIE------DSLS--- 275
N + KTET + D ++ ++ K+DSK E+ D ++ K + DS+
Sbjct: 448 NEDTGKTETDVKAKETDSIEANDKDEKTDSK-ETEDKVEETESKEADVKAKETDSIEVDD 506
Query: 276 PIEAIDFGNTARVVKEYNGETVVENPTDRLTEDINEKENEFEPKSNHDFFED 431
E D TA V++ + + E P ++ NEK + + K + E+
Sbjct: 507 KEEKTDSKETADKVEQTDSKDTNEKPAKDDNKEANEKAEKVDSKDVKEKIEE 558
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 423 FEDPSIFPIIDCPENCTELDF---NEFIFNEDIQSKYKDEYYDDANDFFLDASRFKRSVN 593
+E P+ P C N LD N+ +F ++ + K D+ + + + K +N
Sbjct: 252 YERPNSNPFEVCELNAILLDAKIQNQLLFIRNLLHERKYVSIDELDAILEENEKNKHLIN 311
Query: 594 IIEEENRAV 620
I+++EN+ V
Sbjct: 312 ILQKENKRV 320
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 81 VHAAVIDRGLQTQLNMNREVNKTETIIDDNANDVL 185
VH+ D + NR T+ +DD+AND L
Sbjct: 596 VHSPAFDDSSDPKFETNRSETPTQYTLDDSANDEL 630
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/81 (18%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +3
Query: 174 NDVLKGSNNKSDSKAESRDVLKP-RSPKNIEDSLSPIEAIDFGNTARVVKEYNGETVVEN 350
N ++ N ++ K + ++ + + IE+ L+ ++ + + + N T V+N
Sbjct: 763 NQTVEAVNTETSDKLQEKEANHELENIEKIEEKLTEVDKVSLSDAFPDQEIKNSRTSVQN 822
Query: 351 PTDRLTEDINEKENEFEPKSN 413
T ++++ EKE + + N
Sbjct: 823 GTRSVSKNTPEKETKVDKIDN 843
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 27.1 bits (57), Expect = 2.9
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 17/85 (20%)
Frame = +3
Query: 537 YDDANDFFLDASRFKRSVNIIEEENRAVTVPSY----KISVKDMK------FSDTRS--- 677
YDD N F R V + + + +T+P + K+S D K F ++RS
Sbjct: 424 YDDINQLFWYPEGIARIVTV--DGTQLITLPKWERFHKLSEVDWKKAFYKTFYESRSWFH 481
Query: 678 ----FNNVHT*HFQVFWSYNVKRGP 740
FN + HF +W Y V P
Sbjct: 482 LVTNFNRIWVIHFTTYWYYTVFNSP 506
>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 336
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 450 IDCPENCTELDFNEFIFNEDIQSKYKDE 533
I CPE +L +++++F+ DI S K++
Sbjct: 89 ITCPELSYDLGYSDYVFDIDIYSASKEK 116
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 27.1 bits (57), Expect = 2.9
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Frame = +3
Query: 126 MNREVNKTETIIDDNANDVLKGSNNKSDSKAESRDVLKPRSPKNIE------DSLSPIEA 287
++ EVN E+++ N VLK S + + S+A +SP+NIE D E
Sbjct: 625 VDSEVNG-ESLVQ--VNKVLK-SEDDNTSEASKDPSSHVKSPENIEKLKQNDDHFEVTEE 680
Query: 288 IDFGNTARVV-KEYNG--ETVVENPTDRLTEDINEKENEFEPKSNHDFFEDPS 437
I +++ K+ N ET++E + + + ++K++E K D ++PS
Sbjct: 681 ITSTINSKISEKQENNVAETILEVTSSPKSSENSQKQSEITKKRGRDEEDEPS 733
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 716 PEYLEMLSMYIVERSSIAKFHILYG 642
P YL++LS ++ SSI F + YG
Sbjct: 329 PLYLDVLSSFVASGSSIELFAVRYG 353
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 5.0
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +3
Query: 270 LSPIEAIDF-GNTARVVKEYNGETVVENPTDRLTEDINEKENEFEPKSNHDFFEDPSIFP 446
LSP++A+ + G T+R +++V+ ++RL E +EK+++ +S H + P
Sbjct: 1564 LSPLDAVYWSGKTSR-------KSLVQKVSERLQEQASEKDDKSSVESEHSILTSTTRTP 1616
Query: 447 IIDCPENCTELDFNEFIFNEDIQSKYKDEY 536
+ T+ F+ I + Y++ Y
Sbjct: 1617 SLGI--YTTDAQLRNFLNRISIDA-YEESY 1643
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Frame = +3
Query: 312 VVKEYNGETVVENPTDRLTEDIN------EKENEFEPKSNHDFFE 428
V++++ G T +EN D + D+N K FE +DFF+
Sbjct: 166 VIRDFLGNTSMENLADTIMTDLNNIWASLSKPEGFENSVINDFFD 210
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/64 (21%), Positives = 29/64 (45%)
Frame = +3
Query: 147 TETIIDDNANDVLKGSNNKSDSKAESRDVLKPRSPKNIEDSLSPIEAIDFGNTARVVKEY 326
T T +D +++ NN ++ +++ + SPK S S + GN+ + + E
Sbjct: 348 TSTEANDESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSHSDNVVLSDGNSVKKMNED 407
Query: 327 NGET 338
+T
Sbjct: 408 GADT 411
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 411 NHDFFEDPSIFPIIDCPENCTELDFNEFIFNEDIQSKYKDEYYDDAN 551
N DF + P + P D E E D E F+E+ + ++E DD +
Sbjct: 161 NPDFDDAPPVQPDADEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGD 207
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,982
Number of Sequences: 5004
Number of extensions: 58421
Number of successful extensions: 254
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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