Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9c06
         (754 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC133019-1|AAI33020.1| 1427|Homo sapiens CCDC144A protein protein.     33   1.1  
AF286471-1|AAG00550.1|  316|Homo sapiens retinitis pigmentosa GT...    32   2.5  

>BC133019-1|AAI33020.1| 1427|Homo sapiens CCDC144A protein protein.
          Length = 1427

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 21/80 (26%), Positives = 40/80 (50%)
 Frame = +3

Query: 291 DFGNTARVVKEYNGETVVENPTDRLTEDINEKENEFEPKSNHDFFEDPSIFPIIDCPENC 470
           D G   ++ ++ NGE   + P D+ + + NE +N+  P+++     +PS     DC E  
Sbjct: 555 DDGLNQQIPRKENGEH--DRPADKTSNEKNEVKNQIYPEADFADSMEPSEIASEDC-ELS 611

Query: 471 TELDFNEFIFNEDIQSKYKD 530
             +  N  +  E ++ +YKD
Sbjct: 612 HSVYENFMLLIEQLRMEYKD 631


>AF286471-1|AAG00550.1|  316|Homo sapiens retinitis pigmentosa
           GTPase regulator protein.
          Length = 316

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
 Frame = +3

Query: 99  DRGLQTQLNMNRE-VNKTETIIDDNANDVLKGSNNKSDSKAESRDVLKPRSPKNIEDSLS 275
           DRG+ T+   N++ V K E+   D   D  + S  K DS  E        S + I D   
Sbjct: 153 DRGMNTESEENKDFVKKRESCKQDVIFDSERESVEKPDSYMEGAS----ESQQGIADGFQ 208

Query: 276 PIEAIDFGNTARVVKEYNGETVVENPTDRLTEDINEKENE 395
             EAI+F +  +   E   +  +     +L E  NEKE +
Sbjct: 209 QPEAIEFSSGEKEDDEVETDQNIRYGR-KLIEQGNEKETK 247


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,057,841
Number of Sequences: 237096
Number of extensions: 1811011
Number of successful extensions: 8706
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8703
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)