Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9c05
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    29   0.41 
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    26   2.2  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   2.9  
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha...    25   3.9  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   3.9  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   5.1  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   5.1  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   6.7  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.7  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    25   6.7  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   6.7  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    24   8.9  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    24   8.9  
SPAC6F12.04 |||COPI-coated vesicle associated protein |Schizosac...    24   8.9  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    24   8.9  

>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 28.7 bits (61), Expect = 0.41
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 387 FTCQFSSS-FILVLIFHSSLSFLSTSKWFEFFLPRYASSFSFVNILIILWLLYET 226
           FTC+F+ S F L L     +  LST + +   +    S   FV   IIL ++Y T
Sbjct: 694 FTCKFAESYFFLTLSIRDPIIVLSTMRPYLCSIYWAGSRLCFVQPRIILGIMYFT 748


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 150 SYLYRLHWNHSRKKPLAATLRSMYSSFH 233
           S LY + WNHS+ K L     ++YS+ H
Sbjct: 154 SVLYAVDWNHSKDKHLNGA--ALYSNGH 179


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 69   KMKKFHIFVKVSNMKQFVVFLNFQQYLSYLYRLHWNHSRK 188
            K   F + V +++ +QF+  +N   Y SY YR+  + ++K
Sbjct: 1239 KQANFQLIV-ITHDEQFIRLVNSDAYCSYYYRVKRDTNQK 1277


>SPBC409.20c |psh3||ER chaperone SHR3 homologue
           Psh3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -3

Query: 372 SSSFILVLIFHSSLSFLST 316
           S+SFI  L+FHSS++ ++T
Sbjct: 26  STSFIFALLFHSSVADVNT 44


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 403 FFIKPFYMSIFFIFHFGINLSF 338
           FFIK  Y+S FF F F  + +F
Sbjct: 62  FFIKMRYLSFFFEFFFLFSFAF 83


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 174 SNAACTNKIGIVENSKKQQI 115
           +NAACT K+ I++  + Q++
Sbjct: 453 ANAACTGKVWIIQGCRDQKL 472


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 93  VKVSNMKQFVVFLNFQQYLSYLYRLHWNHSRKKPLAATLRSMYS 224
           + +S +  F+ F  F  + SY+ +   +HSR+  L + + S  S
Sbjct: 254 IHLSQINYFLWFFFFFSFPSYIIKYLMSHSRRSKLLSAVFSKKS 297


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 284 YLGRKNSNHLEVDKNDKEE*KINTK 358
           Y+ R+N N + +DK+   +  +NTK
Sbjct: 617 YINRQNENAVSIDKSRDLQGTVNTK 641


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -3

Query: 354 VLIFHSSLSFLSTSKWFEFFLPRY 283
           +L+ ++ ++F  T++W  +FL  Y
Sbjct: 245 ILLVYTEIAFADTTEWATYFLNAY 268


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 95  QSF*YETICCFFEFSTIPILFVQAALEPFP 184
           +SF Y  I CF+ F+T P+L+    L+ +P
Sbjct: 3   KSFAYRHIWCFWRFNT-PLLWFPQPLKYWP 31


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 153 YLYRLHWNHSRKKPLAATLRSMYSSFHKAAT 245
           YLY  +   +  K L++TL   +S+FH A T
Sbjct: 676 YLYYENRQSNTLKSLSSTLIRTFSTFHLATT 706


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +3

Query: 90  FVKVSNMKQFVVFLNFQQYLSYLYRLHWNHSRKKPLAATLRSMYSSFHKAAT 245
           FV VSN  QF      +  +S    +  N++RK PL     +  SSF+K  T
Sbjct: 17  FVSVSN-SQFRADRLDEDAISVSSSIIQNNTRKSPLKRVSITSESSFYKENT 67


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 196 WQPPFVQCTHRFIKQPQNYENINKRKTT 279
           W+  F Q     IKQP N E+  + K T
Sbjct: 777 WRDDFAQYITNSIKQPPNSESKGQSKKT 804


>SPAC6F12.04 |||COPI-coated vesicle associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 276 SFSFVNILIILWLLYETMSTLN-EGWLPAVFFGNGS 172
           SFSFVN L+ L+++   + T+  E  +P +    GS
Sbjct: 28  SFSFVNALLALFIIVFGLGTIGLEKEIPPIAIKYGS 63


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 120 VVFLNFQQY-LSYLYRLHWNHSRKKPLAATLR 212
           + + N  Q+ L+  Y +HW+ S+ KPL    R
Sbjct: 66  ITYTNHLQFILTISYLVHWDLSQVKPLVENNR 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,657,540
Number of Sequences: 5004
Number of extensions: 33552
Number of successful extensions: 105
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)