Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9c05
         (437 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0356 - 20584212-20584628,20584798-20584899,20585658-205857...    27   6.6  
04_01_0268 - 3585907-3588086,3590167-3590326                           27   6.6  
03_06_0662 + 35377974-35378270,35378354-35378623,35378795-353789...    27   6.6  

>05_04_0356 -
           20584212-20584628,20584798-20584899,20585658-20585705,
           20586046-20586186,20586315-20586437,20587166-20587252,
           20587630-20587742,20587844-20587943,20588217-20588601,
           20588841-20588917,20589501-20589593,20589697-20589774,
           20590923-20591246
          Length = 695

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 146 PILFVQAALEPFPKKTAGSHPSFNVLIVS*SSHRIMRILTKEKLLAYLGRKNSNHLEVD 322
           P    Q A+ P P  +  +HP+ N       S+R   ++ K + L Y+G+ +S+  ++D
Sbjct: 91  PAAAAQPAVAPLPGPSGATHPTENDCA---QSNRFNSVIEKIERL-YMGKNSSDEEDLD 145


>04_01_0268 - 3585907-3588086,3590167-3590326
          Length = 779

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +3

Query: 90  FVKVSNMKQFVVFLNFQQYLSYLYRLHWNHSRKKPLAATLRSMYSSFHKAATEL 251
           F   SN KQ  V +    Y+++L  +        P    LRS+Y   HKA  E+
Sbjct: 548 FASPSNSKQVQVIMALSNYMAFLVAVR---PSMLP-GLKLRSLYKETHKALVEI 597


>03_06_0662 +
           35377974-35378270,35378354-35378623,35378795-35378973,
           35380073-35380116,35380295-35380384,35380472-35380588,
           35380679-35380803,35380883-35381155,35381253-35381386,
           35381518-35381604,35381714-35381831
          Length = 577

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 253 HNSVAAL*NDEYIERRVAASGFFREWFQCSL 161
           H SV AL + +   R  A +GFF EW  C++
Sbjct: 322 HQSVVALASFKGERRFFACTGFFIEWKGCTI 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,352,420
Number of Sequences: 37544
Number of extensions: 168666
Number of successful extensions: 411
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)