Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9c02
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    25   4.0  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   5.2  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    25   5.2  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   5.2  
SPAC1556.06.2 |meu2|SPAC1556.06b, SPAC1556.06|sequence orphan|Sc...    25   6.9  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    25   6.9  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.9  

>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 400 ILLDSTHQLQPINFNGSCMVWPRNNV 323
           +LL ++ +L  I FNG    +PR+N+
Sbjct: 842 LLLKNSQELYIILFNGMVFTFPRDNI 867


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 245 ITFGFTTDILRSAINYHQIYLLKFSSNIIPWPNHATPIEIYRLQL 379
           ITF     +LR  + ++ +    FS++   +P H  PI I R+ L
Sbjct: 122 ITFDGFKRLLRMHVPFYTLSFDTFSTHTNFFPRHTFPIFIARVSL 166


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 134 LEFNLSPKFISFFMLSSYVHVCL 202
           L+F L+PKF S  +L  Y +VC+
Sbjct: 240 LKFLLTPKFASSPILLKYGYVCI 262


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = +2

Query: 164 SFFMLSSYVHVCLDNDSQEDTKIHV**ITFGFTTDILRSAINYHQIYLLKFSSNIIPWPN 343
           SF     +     D + QE  ++         +TD LR+ +    IYLL F S    + N
Sbjct: 511 SFLKFDYFTQCAEDGEFQEYVELVEWSDNLWSSTDYLRATLGALTIYLLLFESKFNMYGN 570

Query: 344 HATPI 358
            A  I
Sbjct: 571 KAEEI 575


>SPAC1556.06.2 |meu2|SPAC1556.06b, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 99

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 210 SLSRHTCTYELNMKKEINFGDRLNSRKIQEIVFH 109
           +L    C YE   K+  +  + LN +K+ + +FH
Sbjct: 65  NLDLFPCCYETTDKRSKHLKNMLNKKKLIKHIFH 98


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 210 SLSRHTCTYELNMKKEINFGDRLNSRKIQEIVFH 109
           +L    C YE   K+  +  + LN +K+ + +FH
Sbjct: 742 NLDLFPCCYETTDKRSKHLKNMLNKKKLIKHIFH 775


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 247 NIRLYNRHFEKCHKLSSNIFTKI 315
           N RL+  H  K +K+SS I TK+
Sbjct: 415 NARLFFFHGVKLYKISSRILTKL 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,827,420
Number of Sequences: 5004
Number of extensions: 38270
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)