Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9c02
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0369 - 15260013-15260273,15260367-15260516,15261518-152615...    28   2.9  
07_01_1154 - 10850206-10850318,10850528-10850658,10850998-108511...    27   5.1  

>06_02_0369 -
           15260013-15260273,15260367-15260516,15261518-15261577,
           15262114-15262241,15262559-15262654,15262655-15263039
          Length = 359

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +3

Query: 120 FLEFSLNLTYLQNLFLSSC*VRMYMYASITTLRKTQKYMYNK 245
           ++   +N T+L++ FL+   V + +Y+ ITT    Q  +Y++
Sbjct: 125 YIHTGINFTFLKSHFLACASVVVCLYSYITTFTLNQANVYHR 166


>07_01_1154 -
           10850206-10850318,10850528-10850658,10850998-10851110,
           10851221-10851307,10852873-10853000,10853132-10853210,
           10853262-10853354,10854211-10854295,10855000-10855085,
           10855183-10855375,10856891-10856970
          Length = 395

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 156 FGDRLNSRKIQEIVFHCQIVFYFHKHCS 73
           +G ++N  K Q + F C+    F KHCS
Sbjct: 139 YGRKVNIWKKQLLNFFCEFFLNFSKHCS 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,256,036
Number of Sequences: 37544
Number of extensions: 191810
Number of successful extensions: 375
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)