Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9c02
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024810-18|ABC71796.1|  787|Caenorhabditis elegans Abnormal cel...    30   0.87 
AB212859-1|BAE66674.1|  787|Caenorhabditis elegans COGC-1 protein.     30   0.87 
Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AF036705-5|AAB95172.1|  544|Caenorhabditis elegans Hypothetical ...    27   6.1  
U28928-10|AAN63432.2|  388|Caenorhabditis elegans Hypothetical p...    27   8.1  

>AC024810-18|ABC71796.1|  787|Caenorhabditis elegans Abnormal cell
           migration protein 30 protein.
          Length = 787

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = -3

Query: 232 YFCVFLRVVI--EAYMYIRT*HEERNKFWR*VKFKENSRNSFSLPNRLL 92
           Y C  +R +   +AY + +T +E+ ++ WR ++ K + R + +LP++L+
Sbjct: 244 YKCELIREMCADQAYSFEKTINEDMDRVWRHLREKLSGRGAGTLPSQLV 292


>AB212859-1|BAE66674.1|  787|Caenorhabditis elegans COGC-1 protein.
          Length = 787

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = -3

Query: 232 YFCVFLRVVI--EAYMYIRT*HEERNKFWR*VKFKENSRNSFSLPNRLL 92
           Y C  +R +   +AY + +T +E+ ++ WR ++ K + R + +LP++L+
Sbjct: 244 YKCELIREMCADQAYSFEKTINEDMDRVWRHLREKLSGRGAGTLPSQLV 292


>Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical
           protein F14B4.3 protein.
          Length = 1127

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 293 HQIYLLKFSSNIIPWPNH-ATPIEIYRLQL 379
           H   L  F+ N+IP+P+H  +P  +Y+ Q+
Sbjct: 641 HPSCLFSFAGNLIPFPDHNQSPRNVYQCQM 670


>AF036705-5|AAB95172.1|  544|Caenorhabditis elegans Hypothetical
           protein F37C4.6 protein.
          Length = 544

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 248 TFGFTT-DILRSAINYHQIYLLKFSSNIIPWPNHATPIE 361
           TFG T  +I   +++  Q+Y+   S  I  W N++TPIE
Sbjct: 478 TFGITGGNIFHGSMSLDQLYV---SRPISKWSNYSTPIE 513


>U28928-10|AAN63432.2|  388|Caenorhabditis elegans Hypothetical
           protein C44B7.12 protein.
          Length = 388

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 128 IFLEFNLSPKFISFFMLSSYVHVCLDN 208
           ++LE   SPK   F     Y+ VC+++
Sbjct: 140 VYLELRTSPKETDFMTYEDYLQVCIES 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,884,296
Number of Sequences: 27780
Number of extensions: 207301
Number of successful extensions: 467
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)