Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9c01
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    30   0.17 
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   4.9  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   4.9  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   6.5  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        25   8.5  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   8.5  

>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = -2

Query: 423  MTGSFDYSLRYLNNSKIFWIFL 358
            +T +F++ +RY  NS++FWIF+
Sbjct: 1011 ITPNFNWDMRYHGNSQMFWIFV 1032


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 477  FFLWLPNYKFHSYNIFICMTGSFDY 403
            F+ W+ N  +HS  +F+C    F Y
Sbjct: 1049 FWSWITNGFYHSLLLFLCSIAVFYY 1073


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 265  LPARYKRQPLSEEEIAYING-GGIENLSQSKSQKDPKDLGVIQISQGIIKGTSHTN 429
            LPA     P S  E    N    +E  ++SKS+K PK  G   IS    K  SH +
Sbjct: 1278 LPASAIAPPKSSNEKKSSNNVKAVEAETKSKSEKSPKKNGT-NISDANNKNESHVS 1332


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 204 NPCAKPACCSNE-YWCYTRHRPTSTLQE 284
           +P  KP+CCS E   C +  +P+   QE
Sbjct: 232 SPSEKPSCCSQEKKSCCSSKKPSCCSQE 259


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 480 LFFLWLPNYKFHSYNIFICM 421
           +F + +  +KFHS  +F+C+
Sbjct: 85  VFIIGICKHKFHSSTVFLCL 104


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 337 NLSQSKSQKDPKDLGVIQISQGIIKGT 417
           NL+      DPKDL + ++ + +IK T
Sbjct: 720 NLNTPNLSYDPKDLDISKVGKPVIKTT 746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,570,692
Number of Sequences: 5004
Number of extensions: 26167
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)