Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9c01
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1385 - 33157557-33157655,33157752-33158201,33158864-331590...    31   0.40 
03_01_0365 - 2839190-2839251,2839637-2839694,2839946-2840032,284...    28   4.9  
03_02_0085 - 5539188-5539388,5539576-5539714,5540108-5540279,554...    27   8.6  

>04_04_1385 -
           33157557-33157655,33157752-33158201,33158864-33159004,
           33159058-33159329,33160371-33160821
          Length = 470

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
 Frame = +3

Query: 192 CYCWNPCAKPA--CCSNEYWCYTRHRPTSTLQETTTLRRRD 308
           CY W  C      CC + Y C     P   +Q+ T L  +D
Sbjct: 401 CYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKD 441


>03_01_0365 -
           2839190-2839251,2839637-2839694,2839946-2840032,
           2840117-2840206,2840575-2840650,2840877-2840971,
           2841090-2841173,2841270-2841343,2841803-2841827
          Length = 216

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 325 GGIENLSQSKSQKDPKDLGVIQISQGIIKGTSHTNKNVITMKFI 456
           GG+ N+S   S  D KDL     ++ ++ G S   K+ I ++F+
Sbjct: 13  GGLNNISNDNSATDSKDLR----AKLVLLGDSGVGKSCIVLRFV 52


>03_02_0085 -
           5539188-5539388,5539576-5539714,5540108-5540279,
           5541119-5541165,5541450-5541527,5542113-5542177,
           5543108-5543155,5543393-5543473,5543586-5543783
          Length = 342

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 117 CYKIS*RWG*SCRYKLSRSFRTHCC 191
           C +++ RWG S R K+ +  +  CC
Sbjct: 165 CQRVNARWGSSERRKVQKHLKLRCC 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,707,312
Number of Sequences: 37544
Number of extensions: 159674
Number of successful extensions: 421
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)