Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9b24
         (597 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   3.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   4.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.5  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 227 IVNYLPQNITEKDLYAMFVTIGPIESCRVMKDF 325
           +VNY    I+E   Y   ++ GP++     K+F
Sbjct: 53  LVNYNVSEISENFYYLPAMSTGPLKYAIFQKNF 85


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 341 YGFGFVNFTREEDAARAIDTFNGYQLRNKRL 433
           YG G   +  +ED +R +  F    LR   L
Sbjct: 610 YGLGAELYQIQEDGSRGVIAFASRSLRGPEL 640


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 364 HQGRGRGSSDRHFQWLPAP 420
           H G+   S D HF+  P P
Sbjct: 72  HHGQWNYSPDNHFEQYPNP 90


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,681
Number of Sequences: 336
Number of extensions: 2857
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)