Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9b24
(597 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 70 3e-13
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 65 6e-12
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 58 1e-09
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 55 7e-09
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 43 1e-08
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 54 1e-08
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 52 5e-08
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 52 6e-08
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 52 6e-08
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 51 1e-07
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 51 1e-07
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 50 2e-07
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 50 3e-07
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 47 2e-06
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 45 1e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 45 1e-05
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 44 2e-05
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 43 3e-05
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 43 3e-05
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 42 9e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 40 2e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 40 3e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 40 4e-04
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 39 5e-04
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 39 5e-04
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 39 6e-04
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 38 0.001
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 37 0.002
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 36 0.003
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 36 0.004
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 36 0.004
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ... 35 0.010
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 34 0.014
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 31 0.13
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 30 0.29
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 29 0.52
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.68
SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ... 28 0.90
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 1.2
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 28 1.2
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 1.6
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 27 2.1
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 27 2.7
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.7
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 26 3.6
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 26 3.6
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 26 4.8
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 26 4.8
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S... 26 4.8
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 25 8.4
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 8.4
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 69.7 bits (163), Expect = 3e-13
Identities = 38/131 (29%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Frame = +2
Query: 197 AGGDTARTNLIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREE 376
+G +L V L ++TE L+ +F +IGP+ S RV +D T S G+ +VNF E
Sbjct: 73 SGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNME 132
Query: 377 DAARAIDTFNGYQLRNKRLKVSYAR--PSGDDIKETNLYVTNLPRAITDDQLETIFGKYG 550
D +A+D N ++ + ++ +++ PS + N+++ NL AI + L F +G
Sbjct: 133 DGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFG 192
Query: 551 RIVQKHILRDK 583
+I+ + D+
Sbjct: 193 KILSCKVAVDE 203
Score = 68.1 bits (159), Expect = 9e-13
Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 8/130 (6%)
Frame = +2
Query: 221 NLIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDT 400
N+ + L I K L+ F G I SC+V D + G + G+GFV+F E A AI+
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEH 227
Query: 401 FNGYQLRNKRLKVSY------ARPSGDDIKE--TNLYVTNLPRAITDDQLETIFGKYGRI 556
NG L +K++ V + + + +K TN+Y+ NL IT+ + +FG++G I
Sbjct: 228 VNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEI 287
Query: 557 VQKHILRDKN 586
+++D+N
Sbjct: 288 TSLSLVKDQN 297
Score = 57.2 bits (132), Expect = 2e-09
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 18/140 (12%)
Frame = +2
Query: 218 TNLIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAID 397
TN+ + L ITE++ +F G I S ++KD + GFGFVN+ E A +A+D
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVD 319
Query: 398 TFNGYQLRNKRLKVSYARPSGDDIKE------------------TNLYVTNLPRAITDDQ 523
N + + K+L V A+ + +E NL++ NL + D++
Sbjct: 320 ELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDER 379
Query: 524 LETIFGKYGRIVQKHILRDK 583
L+ F +G I I+ D+
Sbjct: 380 LKAEFSAFGTITSAKIMTDE 399
Score = 29.9 bits (64), Expect = 0.29
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 440 SYARPSGDDIKETNLYVTNLPRAITDDQLETIFGKYGRIVQKHILRD 580
S A PSG +LYV L ++T+ L +F G + + RD
Sbjct: 68 SVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRD 114
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 65.3 bits (152), Expect = 6e-12
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 3/127 (2%)
Frame = +2
Query: 209 TART-NLIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAA 385
T+RT N+ + LP N ++++L G + S + + D +T G+GF F E+ A
Sbjct: 292 TSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSAL 351
Query: 386 RAID--TFNGYQLRNKRLKVSYARPSGDDIKETNLYVTNLPRAITDDQLETIFGKYGRIV 559
I T GYQ + S S D + TNLY++NLP + + T+F K +I+
Sbjct: 352 ICISAMTLCGYQCSFAKESFSARLQSLQDTESTNLYISNLPLHWNESDISTLF-KPSKII 410
Query: 560 QKHILRD 580
+LRD
Sbjct: 411 SNRVLRD 417
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 58.0 bits (134), Expect = 1e-09
Identities = 31/123 (25%), Positives = 56/123 (45%)
Frame = +2
Query: 224 LIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDTF 403
+ + L T+ L F G + C VM+D TG S GFGF+ F + +
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMS-- 222
Query: 404 NGYQLRNKRLKVSYARPSGDDIKETNLYVTNLPRAITDDQLETIFGKYGRIVQKHILRDK 583
+ L K + A P + K ++V +P T+++ F ++GR++ ++ DK
Sbjct: 223 KEHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDK 282
Query: 584 NSG 592
++G
Sbjct: 283 DTG 285
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +2
Query: 470 KETNLYVTNLPRAITDDQLETIFGKYGRIVQKHILRDKNSG 592
++ +++ L TDD L F ++G ++ ++RD +G
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTG 201
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 55.2 bits (127), Expect = 7e-09
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Frame = +2
Query: 221 NLIVNYLPQNIT--EKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAI 394
NL V L NI + L +F G I+SC + T S G+GFV+F+ +A +AI
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 395 DTFNGYQLRNKRLKVSYARPSGDDIKETN-LYVTNLPRAITDDQLETIFGKYGRIVQKH 568
+T NG KRL V+YA D K + ++ + P + L +I++ H
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRKKRLSAIFSQSYPPVVPSPSLTIPMATEPQILEYH 538
Score = 30.7 bits (66), Expect = 0.17
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Frame = +2
Query: 221 NLIVNYLPQNITEKDLYAMFVTIGPIESCRVM--KDFKTGYSYG---FGFVNFTREEDAA 385
++ V LP DL+ +F G ++ K K+ S F F+ F + A
Sbjct: 21 SIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSAD 80
Query: 386 RAIDTFNGYQLRNKRLKVSY 445
AI + NG + LKV Y
Sbjct: 81 NAIASLNGSSFQGNTLKVEY 100
Score = 30.3 bits (65), Expect = 0.22
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 473 ETNLYVTNLPRAITDDQLETIFGKYGRIVQKHIL-RDKNSGT 595
E ++YV NLP L +F +G + H+L R KN T
Sbjct: 19 EISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKST 60
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 43.2 bits (97), Expect(2) = 1e-08
Identities = 27/77 (35%), Positives = 38/77 (49%)
Frame = +2
Query: 224 LIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDTF 403
L V + + EKD+ F G +ES R+ K F GFG+V T +DA A+
Sbjct: 759 LYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRF--NQHKGFGYVVMTTNQDAENALSA- 815
Query: 404 NGYQLRNKRLKVSYARP 454
G QL N+ L V ++P
Sbjct: 816 AGKQLGNRVLNVVLSKP 832
Score = 37.1 bits (82), Expect = 0.002
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%)
Frame = +2
Query: 218 TNLIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAID 397
TNL V P E D+ +F G + R + + F +V + ++A A+
Sbjct: 666 TNLYVTNFPPTYDELDITKLFSAYGNVVDVR-FPSLRYNTNRRFCYVQMRKPDEAHNALQ 724
Query: 398 TFNGYQLRNKRLKVSYARP------SGDDIKETNLYVTNLPRAITDDQLETIFGKYGRI 556
++V + P SG + LYVTN+ + + +ET F YG++
Sbjct: 725 LHKKLLEEKYPIQVFISDPLRRTPRSGAVYEGRELYVTNIDFKVNEKDVETFFRDYGQV 783
Score = 33.9 bits (74), Expect = 0.018
Identities = 29/112 (25%), Positives = 48/112 (42%)
Frame = +2
Query: 224 LIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDTF 403
++V LP +I+E +L F G I +++D + + T E AA+ D
Sbjct: 592 VLVTNLPSDISENELKIFFKDCGNIIRIFILEDNQKDVKVAQIEFSETSEVLAAKTRDLK 651
Query: 404 NGYQLRNKRLKVSYARPSGDDIKETNLYVTNLPRAITDDQLETIFGKYGRIV 559
+ +R + V +TNLYVTN P + + +F YG +V
Sbjct: 652 S---IRGHEISVQIH-------VDTNLYVTNFPPTYDELDITKLFSAYGNVV 693
Score = 31.1 bits (67), Expect(2) = 1e-08
Identities = 15/53 (28%), Positives = 31/53 (58%)
Frame = +2
Query: 434 KVSYARPSGDDIKETNLYVTNLPRAITDDQLETIFGKYGRIVQKHILRDKNSG 592
K+S + S + IK +L VTN+ + + +L ++F YG++ + +L ++ G
Sbjct: 860 KMSTPKKSFEQIKSKSLGVTNVDGTVNEARLRSLFESYGKL-YRVVLHPEHEG 911
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 54.4 bits (125), Expect = 1e-08
Identities = 28/75 (37%), Positives = 43/75 (57%)
Frame = +2
Query: 224 LIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDTF 403
+ V LP ++++L +F IG + R+ + TG S GFG V F E DAA +I+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYE-PTGRSKGFGVVQFENENDAASSIEKL 340
Query: 404 NGYQLRNKRLKVSYA 448
NGY+ + L++SYA
Sbjct: 341 NGYRYGGRPLQLSYA 355
Score = 33.5 bits (73), Expect = 0.024
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Frame = +2
Query: 239 LPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDTFNGYQL 418
LP N+ +DL +F G + + + + G S G G V + ++A AI +
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMN-QEGRSRGIGIVVMSSMKEAMHAIQMLHNTDF 248
Query: 419 RNKRLKVSYARPSGDDIKETN------------LYVTNLPRAITDDQLETIFGKYGRIVQ 562
+ L+V R + I++ +YV NLP A +D L +F G +++
Sbjct: 249 MGRTLEVRLDRFAHHKIEDLVYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIR 308
Query: 563 KHI 571
I
Sbjct: 309 ARI 311
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 52.4 bits (120), Expect = 5e-08
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 15/137 (10%)
Frame = +2
Query: 215 RTNLIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAI 394
R + V+ L +T ++LY F GP+ ++++D +G S G +V F ED+ +A
Sbjct: 239 RRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFC-HEDSVQAA 297
Query: 395 DTFNGYQL---------------RNKRLKVSYARPSGDDIKETNLYVTNLPRAITDDQLE 529
+G +L R R AR + +I L V+N+ +TD+ ++
Sbjct: 298 IALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVK 357
Query: 530 TIFGKYGRIVQKHILRD 580
IF +G I H+ RD
Sbjct: 358 AIFEPFGDIEFVHLQRD 374
Score = 45.2 bits (102), Expect = 7e-06
Identities = 23/82 (28%), Positives = 43/82 (52%)
Frame = +2
Query: 194 AAGGDTARTNLIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTRE 373
AA + L V+ + N+T++D+ A+F G IE + +D + S GFG++ +
Sbjct: 332 AASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNR-SKGFGYIQYRNP 390
Query: 374 EDAARAIDTFNGYQLRNKRLKV 439
A A++ NG+ L + ++V
Sbjct: 391 ISARNALEKMNGFDLAGRNMRV 412
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 52.0 bits (119), Expect = 6e-08
Identities = 36/117 (30%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Frame = +2
Query: 158 YWGSMSEGGGLSAAGGDTARTNLIVNYLPQNIT--EKDLYAMFVTIGPIESCRVMKDFKT 331
+W S+ E S +NL V L + + L +F G I S + +
Sbjct: 363 HWDSLRESSP-SIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNS 421
Query: 332 GYSYGFGFVNFTREEDAARAIDTFNGYQLRNKRLKVSYARPSGDDIKETNLYVTNLP 502
G S G+GFV F + E A RA DT NG + KR+ V +A D I+ + N P
Sbjct: 422 GISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFAERKSDRIRRLQAFFANKP 478
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 467 IKETNLYVTNLPRAITD--DQLETIFGKYGRIVQKHILRDKNSG 592
I +NLYV NL + QLE +F +G I+ + NSG
Sbjct: 379 IDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSG 422
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 416 LRNKRLKVSYARPSGDDIKETNLYVTNLPRAITDDQLETIFGKYGRI 556
+ N +L V P + + + +YV N+ ++D+++ F KYG++
Sbjct: 1 MNNSKLSV----PGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQV 43
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 52.0 bits (119), Expect = 6e-08
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
Frame = +2
Query: 212 ARTNLIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARA 391
+ + L V L + DL F +GPI+ V+ + +TG + G+GFV F+ EDA RA
Sbjct: 3 SNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRA 62
Query: 392 IDTFNGYQLRNKRLKVSYARP---------SGDDIKET-------NLYVTNLPRAITDDQ 523
+L + L++ +A P +K+T L + NLP +I Q
Sbjct: 63 AKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQ 122
Query: 524 -LETIFGKYGRI 556
LE F K+G++
Sbjct: 123 HLEPHFSKFGKV 134
Score = 38.3 bits (85), Expect = 8e-04
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 254 TEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAID 397
TE++LY F GP+ +++KD T S G GF+ F E+D ++
Sbjct: 289 TEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
Score = 28.7 bits (61), Expect = 0.68
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = +2
Query: 215 RTNLIVNYLPQNITE-KDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARA 391
R LI+ LP +I + + L F G + ++ G GF FV + A A
Sbjct: 106 RPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTK-GGGRMCGFAFVWMKDRKAAEEA 164
Query: 392 IDTFNGYQLRNKRLKVSYARPSGDDIKETNL 484
+++ NG ++ + + V +A S D + T L
Sbjct: 165 MNSLNGTEIDGRPIAVDWA-VSKDAFEATTL 194
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 332 GYSYGFGFVNFTREEDAARAIDTFNGYQLRNKRL 433
G S GFGF+ F + A A+ NG ++ K++
Sbjct: 536 GRSKGFGFMQFISHKYALMALRWLNGREITVKKI 569
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 51.2 bits (117), Expect = 1e-07
Identities = 24/85 (28%), Positives = 48/85 (56%)
Frame = +2
Query: 209 TARTNLIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAAR 388
TA + V +P +++E+ + +F +GP+++ +++ D +TG G+GF F E A
Sbjct: 4 TAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAM 63
Query: 389 AIDTFNGYQLRNKRLKVSYARPSGD 463
A+ N +L ++++V + PS D
Sbjct: 64 AVRKLNNSELGPRKIRVEF--PSND 86
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 50.8 bits (116), Expect = 1e-07
Identities = 26/86 (30%), Positives = 44/86 (51%)
Frame = +2
Query: 200 GGDTARTNLIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREED 379
G + +L V+ + + E +L +F G + R+M++ T S GFGF++F+ E+
Sbjct: 95 GSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEE 154
Query: 380 AARAIDTFNGYQLRNKRLKVSYARPS 457
A AID N + + L V A+ S
Sbjct: 155 ATSAIDNLNSQEFYGRVLNVQKAKRS 180
Score = 33.5 bits (73), Expect = 0.024
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 434 KVSYARPSGDDIKETNLYVTNLPRAITDDQLETIFGKYGRIVQKHILRD 580
K + P G + +L+V+ + + +D+L+ IF K+G + I+R+
Sbjct: 87 KEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMRE 135
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 50.4 bits (115), Expect = 2e-07
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Frame = +2
Query: 239 LPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDTFNGYQL 418
L + +T+ L+ + + GP+ + + +D GFGF F E+D A N +L
Sbjct: 18 LDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKL 77
Query: 419 RNKRLKVSYARPSG--DDIKETNLYVTNLPRAITDDQLETIFGKYGRIVQ-KHILRDKN 586
K ++V+ A + + NL+V NL + + L F G++V+ + RD+N
Sbjct: 78 FGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN 136
Score = 47.6 bits (108), Expect = 1e-06
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +2
Query: 221 NLIVNYLPQNITEKDLYAMFVTIGP-IESCRVMKDFKTGYSYGFGFVNFTREEDAARAID 397
NL V L + E+ LY F +G +++ +V +D + G S G+GFV++ E A AI+
Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARD-ENGRSKGYGFVSYDSFETADAAIE 158
Query: 398 TFNGYQLRNKRLKVSYA 448
N L NK + VSYA
Sbjct: 159 AMNNQFLMNKPITVSYA 175
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 461 DDIKETNLYVTNLPRAITDDQLETIFGKYGRIVQKHILRDK 583
D ++ +Y+ NL +TD L + + G +V HI RD+
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDR 46
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 49.6 bits (113), Expect = 3e-07
Identities = 25/84 (29%), Positives = 40/84 (47%)
Frame = +2
Query: 200 GGDTARTNLIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREED 379
G DT T ++V +P ++ + L F +G + G G F NF R E+
Sbjct: 196 GEDTIPTAIVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEE 255
Query: 380 AARAIDTFNGYQLRNKRLKVSYAR 451
A + T NGY++ +RL+V + R
Sbjct: 256 AQVVVQTLNGYEINGRRLRVEWKR 279
Score = 26.6 bits (56), Expect = 2.7
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +2
Query: 371 EEDAARAIDTFNGYQLRNKRLKVSYARP--SGDDIKETNLYVTNLPRAITDDQLETIFGK 544
+ A ++D FN Q++ S + P G+D T + V N+P ++ D L F +
Sbjct: 165 DTSAEPSLDAFNSTQIKAGSTANSNSTPVEPGEDTIPTAIVVKNIPFSLEKDTLLDHFKQ 224
Query: 545 YG 550
G
Sbjct: 225 LG 226
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 47.2 bits (107), Expect = 2e-06
Identities = 23/81 (28%), Positives = 43/81 (53%)
Frame = +2
Query: 230 VNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDTFNG 409
V +P + E+ + +F GP++S +++ D ++G G+GF + AA A+ N
Sbjct: 9 VGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLNN 68
Query: 410 YQLRNKRLKVSYARPSGDDIK 472
Y +RL+V + P+ D I+
Sbjct: 69 YDAGTRRLRVDF--PTADQIR 87
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 482 LYVTNLPRAITDDQLETIFGKYGRIVQKHILRDKNSG 592
+YV N+P + ++Q+ IF + G + ++ D SG
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESG 43
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/82 (24%), Positives = 39/82 (47%)
Frame = +2
Query: 206 DTARTNLIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAA 385
+T T +++ +P ++ ++ L+ +F + F G G F NF E+A
Sbjct: 228 ETIPTAIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAK 287
Query: 386 RAIDTFNGYQLRNKRLKVSYAR 451
+ NGY++ +RL+V + R
Sbjct: 288 TVVQVLNGYEITGRRLRVEWKR 309
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 44.8 bits (101), Expect = 1e-05
Identities = 24/77 (31%), Positives = 41/77 (53%)
Frame = +2
Query: 224 LIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDTF 403
L V L + E++L +F G I+ + KD +TG + GF FV++ + A +A D
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRL 263
Query: 404 NGYQLRNKRLKVSYARP 454
+GY N L+ +++P
Sbjct: 264 DGYGWNNLILRCEFSKP 280
Score = 30.3 bits (65), Expect = 0.22
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = +2
Query: 431 LKVSYARPSGDDI------KETNLYVTNLPRAITDDQLETIFGKYGRIVQKHILRDKNSG 592
L+ R SGD + L VTNL +++L +F ++G I + ++ +DK +G
Sbjct: 181 LRAGSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETG 240
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 43.6 bits (98), Expect = 2e-05
Identities = 21/75 (28%), Positives = 41/75 (54%)
Frame = +2
Query: 224 LIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDTF 403
+IV + TE+ + +F GP+++ + D +TGY G+ + + E A +A+D
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 404 NGYQLRNKRLKVSYA 448
N L +++L+V +A
Sbjct: 72 N-LSLLDEKLEVDFA 85
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 43.2 bits (97), Expect = 3e-05
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 221 NLIVNYLPQNITEKDLYAMFVTIGP-IESCRVMKDFKTGYSYGFGFVNFTREEDAARAID 397
++ V L + DL+ F +I P S +++ D TG S +GFV F+ E++ A+
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALM 242
Query: 398 TFNGYQLRNKRLKVSYARP 454
GY + + L++S A P
Sbjct: 243 HMQGYLCQGRPLRISVASP 261
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 43.2 bits (97), Expect = 3e-05
Identities = 25/82 (30%), Positives = 41/82 (50%)
Frame = +2
Query: 206 DTARTNLIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAA 385
DTA + + V L + ++E++L +F G I ++ G GFV F + A
Sbjct: 299 DTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPP------GKGCGFVQFVNRQSAE 352
Query: 386 RAIDTFNGYQLRNKRLKVSYAR 451
AI+ GY L N R+++S+ R
Sbjct: 353 IAINQLQGYPLGNSRIRLSWGR 374
Score = 31.1 bits (67), Expect = 0.13
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +2
Query: 215 RTNLIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAI 394
+T L + L +TE + ++ T+G +++++ TG + G+ FV F +A+ A+
Sbjct: 92 KTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM 151
Query: 395 DTFN-GYQLRNKRLKVSYARPSGDDIKETNL 484
N N K+++A SG ++E ++
Sbjct: 152 SMNNKPIPGTNHLFKLNWA--SGGGLREKSI 180
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 41.5 bits (93), Expect = 9e-05
Identities = 23/77 (29%), Positives = 37/77 (48%)
Frame = +2
Query: 224 LIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDTF 403
L + L IT +++Y +F GP+ R+ +T G FV + +DA RA +
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTR---GTAFVVYENVQDARRACEKL 70
Query: 404 NGYQLRNKRLKVSYARP 454
+GY ++ L V Y P
Sbjct: 71 SGYNFMDRYLVVHYYNP 87
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 482 LYVTNLPRAITDDQLETIFGKYGRIVQ 562
L++ NL IT +++ +FG+YG + Q
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQ 40
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 40.3 bits (90), Expect = 2e-04
Identities = 18/65 (27%), Positives = 35/65 (53%)
Frame = +2
Query: 257 EKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDTFNGYQLRNKRLK 436
++DL +F G I SC+V++D +TG S + F+ F +E +A + + R+
Sbjct: 257 DEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIH 316
Query: 437 VSYAR 451
V +++
Sbjct: 317 VDFSQ 321
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 473 ETNLYVTNLPRAITDDQLETIFGKYGRIVQKHILRDKNSG 592
E L+V L D+ LE IF ++G+I+ ++RDK +G
Sbjct: 243 ENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETG 282
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 39.9 bits (89), Expect = 3e-04
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = +2
Query: 224 LIVNYLPQNITEKDLYAMFVTIGPIESCRV-MKDFKTGYSY---GFGFVNFTREEDAARA 391
+ V L + + ++ ++F T+G + + + + G G FV F +ED +A
Sbjct: 46 VFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKA 105
Query: 392 IDTFNGYQLRNKRLKVSYARP 454
I+T NG L ++ + V ARP
Sbjct: 106 IETLNGKTLDDREIVVQKARP 126
Score = 35.9 bits (79), Expect = 0.004
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 344 GFGFVNFTREEDAARAIDTFNGYQLRNKRLKVSYA 448
GFGFV+F ED +RAI+ NG Q+ + L V A
Sbjct: 259 GFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSA 293
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 39.5 bits (88), Expect = 4e-04
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = +2
Query: 224 LIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDTF 403
L V LP EK + F GP+ R+ ++ KTG S + F+ F + A +T
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 404 NGYQLRNKRLK 436
+ Y L K L+
Sbjct: 167 HNYLLYGKLLQ 177
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 39.1 bits (87), Expect = 5e-04
Identities = 24/80 (30%), Positives = 34/80 (42%)
Frame = +2
Query: 212 ARTNLIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARA 391
+ T L V +P T +D+ F G I C++M GFGFV DA
Sbjct: 2 SETRLFVGRIPPQATREDMMDFFKGYGQILDCKLMN--------GFGFVEVEDARDARDI 53
Query: 392 IDTFNGYQLRNKRLKVSYAR 451
++ F G + R+ V AR
Sbjct: 54 VNDFQGKEFMGSRIVVEPAR 73
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 344 GFGFVNFTREEDAARAIDTFNGYQLRNK 427
G G V F+ EED A+ + NG ++ +
Sbjct: 135 GAGVVEFSTEEDMRNALTSLNGEVIKGQ 162
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 39.1 bits (87), Expect = 5e-04
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Frame = +2
Query: 338 SYGFGFVNFTREEDAARAIDTFNGYQLRNKRLKVSYARPSGDDIKE-----------TNL 484
S GFGFV F + A A+ NG+ L +L++ + D E T +
Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGTKI 723
Query: 485 YVTNLPRAITDDQLETIFGKYGRI 556
+ NLP T ++++ G YG++
Sbjct: 724 LIKNLPFEATKKDVQSLLGAYGQL 747
Score = 35.9 bits (79), Expect = 0.004
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = +2
Query: 224 LIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDTF 403
L + L + E DL ++F G +E + D KT GF +++F +DA RA
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 404 NGYQLRNKRLKVSYAR 451
+ + + L V A+
Sbjct: 385 DAKPFQGRLLHVLPAK 400
Score = 31.5 bits (68), Expect = 0.097
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 326 KTGYSYGFGFVNFTREEDAARAIDTFNGYQLRNKRLKVSYA 448
K G S F F+ F EEDA +AI N + R++V A
Sbjct: 41 KEGVSRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEVHRA 81
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 38.7 bits (86), Expect = 6e-04
Identities = 25/83 (30%), Positives = 42/83 (50%)
Frame = +2
Query: 206 DTARTNLIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAA 385
D T + V+ LP+NIT ++L + F+ G I T + G + F + A
Sbjct: 172 DPNNTAVYVHQLPENITTQELRSYFLHFGEI--------LYTQVNNNSGRIVFAQRYFAE 223
Query: 386 RAIDTFNGYQLRNKRLKVSYARP 454
+AI+ N + L R+++S+ARP
Sbjct: 224 QAINEMNNFPLHGVRIQLSWARP 246
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 37.9 bits (84), Expect = 0.001
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Frame = +2
Query: 407 GYQLRNKRLKVSYARPS----------GDDIKETNLYVTNLPRAITDDQLETIFGKYGRI 556
G+ + LK+++ARPS + N+++ NLP + + ++E FGK+G+I
Sbjct: 266 GFIFHGRPLKLTFARPSPLPESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKI 325
Query: 557 VQKHILRDKN 586
IL KN
Sbjct: 326 EHIKILSKKN 335
Score = 32.7 bits (71), Expect = 0.042
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Frame = +2
Query: 416 LRNKRLKVSYARPSG-------DDI---KETNLYVTNLPRAITDDQLETIFGKYGRIVQK 565
L +R+KV + + SG D I N+Y +++ ++T ++LE I +YG I
Sbjct: 470 LHGRRIKVGWGKESGPLPRVLEDSILMGASRNVYFSHISDSLTTEELELILRQYGEIESI 529
Query: 566 HILRDKNSG 592
L++++SG
Sbjct: 530 KYLKNRSSG 538
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/74 (21%), Positives = 36/74 (48%)
Frame = +2
Query: 224 LIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDTF 403
+ + L ++ E D+ +F G +++D +TG S GF F+ + + A+D
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 404 NGYQLRNKRLKVSY 445
+L ++ ++V +
Sbjct: 93 TNVKLLDRLVRVDH 106
Score = 31.1 bits (67), Expect = 0.13
Identities = 18/72 (25%), Positives = 37/72 (51%)
Frame = +2
Query: 377 DAARAIDTFNGYQLRNKRLKVSYARPSGDDIKETNLYVTNLPRAITDDQLETIFGKYGRI 556
++ R I+ N +L +K S+ + D +Y+ NL + +D + +F ++G
Sbjct: 2 NSIRQIERLNEQEL-DKPFSSSWHQDYSDS---AYIYIGNLDFDLNEDDILCVFSEFGEP 57
Query: 557 VQKHILRDKNSG 592
V +++RDK +G
Sbjct: 58 VDINLVRDKETG 69
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 36.3 bits (80), Expect = 0.003
Identities = 19/77 (24%), Positives = 38/77 (49%)
Frame = +2
Query: 221 NLIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDT 400
++ V + ++T ++L + F + G + ++ D TG+ GF ++ F+ A+
Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-L 114
Query: 401 FNGYQLRNKRLKVSYAR 451
NG L + LKV+ R
Sbjct: 115 LNGSMLHERPLKVTPKR 131
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 35.9 bits (79), Expect = 0.004
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Frame = +2
Query: 353 FVNFTREEDAARAIDTFN--GYQLRNKRLKVSYARPSG---DDIK-------ETNLYVTN 496
FV F A R + N G +RN+RLK+ + + SG +I N+Y+ N
Sbjct: 361 FVTFVDPVSAFRFFEMSNIHGLVIRNRRLKIGWGKHSGPLPSNIALAVAGGASRNIYIGN 420
Query: 497 LPRAITDDQLETIFGKYGRIVQKHILRDKN 586
++T ++L+ F ++G I + R+KN
Sbjct: 421 ADDSLTIERLKEDFEEFGEIEYVNFFREKN 450
Score = 29.5 bits (63), Expect = 0.39
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 479 NLYVTNLPRAITDDQLETIFGKYGRIVQKHILRDKN 586
N+++ NLP IT+D++ +G I Q I+ ++N
Sbjct: 207 NVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +2
Query: 161 WG--SMSEGGGLSAAGGDTARTNLIVNYLPQNITEKDLYAMFVTIGPIESCRVMKD 322
WG S S L A A N+ + LP ITE ++ GPI+ +++ +
Sbjct: 185 WGKNSASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTE 240
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 35.9 bits (79), Expect = 0.004
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +2
Query: 218 TNLIVNYLPQNITEKDLYAMFV-TIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAI 394
+ +IV+ LP ++TE + +FV +IGP + + G S G + F+R DA RA
Sbjct: 55 SKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYG-PNGRSKGIATIIFSRPGDATRAY 113
Query: 395 DTFNG 409
+ + G
Sbjct: 114 EQYEG 118
>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 695
Score = 34.7 bits (76), Expect = 0.010
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +2
Query: 317 KDFKTGYSYGFGFVNFTREEDAARAIDTFNGYQLRNKRLKVSYARPSGDDIKETNLYV 490
+D ++GYSYG V +R ++ A+DT GY++ K S P I +TN+ V
Sbjct: 313 EDLESGYSYGRTIVPISRSDEDVLALDTIPGYEILGFIPKSSL--PIYYTISDTNIIV 368
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 34.3 bits (75), Expect = 0.014
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +2
Query: 239 LPQNITEKDLYAMFVTIG--PIESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDTFNGY 412
L ++T+ +L + F G P+ + +K + S G GFV F EDAA A+ FNGY
Sbjct: 251 LTNDVTQLELESWFTNHGVHPV-ALWTLKTPEPYKSTGTGFVLFASHEDAADAL-AFNGY 308
Query: 413 QLRNKRLKV 439
L ++ L++
Sbjct: 309 CLGDRMLEI 317
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 31.1 bits (67), Expect = 0.13
Identities = 18/69 (26%), Positives = 38/69 (55%)
Frame = +2
Query: 245 QNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDTFNGYQLRN 424
+++++++L+ +F GP+ V+K +GFV F ED ARA++ G +R
Sbjct: 373 KSLSKRNLWKVFKIYGPLAQI-VLKA-------NYGFVQFFTNEDCARALNAEQGNFVRG 424
Query: 425 KRLKVSYAR 451
++L + ++
Sbjct: 425 QKLHLEISK 433
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 29.9 bits (64), Expect = 0.29
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 77 KIEKNTQLLNEIKNKVETSGKNCY 6
KIEK LLNE N +E+ NCY
Sbjct: 8 KIEKEASLLNERNNLLESDFANCY 31
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 29.1 bits (62), Expect = 0.52
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 353 FVNFTREEDAARAIDTFNGYQLRNKRLKVSY 445
++ + R+EDAARAI +G + L+ SY
Sbjct: 169 YITYQRKEDAARAIAAIDGSVSDGRHLRASY 199
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.7 bits (61), Expect = 0.68
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 449 RPSGDDIKETNLYVTNLPRAITDDQLETIFGKYGRIVQKHILRDKNSG 592
+PS D + ++V L + D L F +YG IV ++ D SG
Sbjct: 254 KPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSG 301
>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 254
Score = 28.3 bits (60), Expect = 0.90
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 410 YQLRNKRLKVSYARPSGDDIKETNLYVTNLPRAITDDQLETIFGKY-GRIV 559
Y KRL + + +D+++ +LY+ N+P T+ L+ + GRIV
Sbjct: 15 YLENKKRLHSIFLKEDTEDVEKKSLYLINVPITTTEKILKRAISQLGGRIV 65
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 482 LYVTNLPRAITDDQLETIFGKYGRIVQKHILRDKNS 589
LYV+NLP + + +F YG + +L NS
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWMLSPDNS 37
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 173 SEGGGLSAAGGDTARTNLIVNYLPQN 250
S G G S+ G R NL YLPQ+
Sbjct: 269 SSGSGFSSGGSGNPRKNLFSPYLPQS 294
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 254 TEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDA 382
TE+ +YA+F G I + D T GF FV + +DA
Sbjct: 44 TEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDA 86
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 167 SMSEGGGLSAAGGDTARTNLIVNYLPQNITEKDLYAMFVTIGPIESCRV 313
S S+ G + G TN+++ L + D+ A + G I +C+V
Sbjct: 83 SNSQSNGAISIRGIAGPTNVVIENLAPGTSSDDVAATLLNFGEILNCQV 131
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/51 (23%), Positives = 29/51 (56%)
Frame = +2
Query: 443 YARPSGDDIKETNLYVTNLPRAITDDQLETIFGKYGRIVQKHILRDKNSGT 595
YA+ D K+ +Y++NLP + +DQ+ + +G ++ ++++ G+
Sbjct: 300 YAKNDVLDSKD-KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGS 349
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 482 LYVTNLPRAITDDQLETIFGKYGRIVQKHILRDKNS 589
L+V NLP ++ + T F YG + +L K+S
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHS 624
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 26.2 bits (55), Expect = 3.6
Identities = 19/83 (22%), Positives = 38/83 (45%)
Frame = +2
Query: 266 LYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDTFNGYQLRNKRLKVSY 445
L ++ T GP+ +MK ++ + F DA+ A+D +G + N L+V+Y
Sbjct: 308 LQSILQTFGPL---LIMKPLRS-QNVSQIICEFYDTRDASFALDELDGRIIHNCCLQVAY 363
Query: 446 ARPSGDDIKETNLYVTNLPRAIT 514
D + ++ ++PR +
Sbjct: 364 YDAMADSVSTSSASSLSVPRGFS 386
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 482 LYVTNLPRAITDDQLETIFGKYGRI 556
L+VTNLPR + L +F K G +
Sbjct: 197 LFVTNLPRIVPYATLLELFSKLGDV 221
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +2
Query: 356 VNFTREEDAARAIDTFNGYQLRNKRLKVSYARPSGDDIKETNLYVTNLPRAITDDQLE 529
VNFT+ + A A+D N S+ + I + L T + R + DD+ E
Sbjct: 533 VNFTKNLNIASAVDVMGWSSTLNLSSLSSFDQEVFQSISKDGLLQTWMARVLGDDKAE 590
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 461 DDIKETNLYVTNLPRAITDDQLETIFGKYGR-IVQKHI 571
+++++ + +TN RA+TDD+ + YG V +HI
Sbjct: 139 EEVEKHYIEITNAYRALTDDKTRENYALYGTPDVPQHI 176
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 6 IAIFATCF-NFIFYFI*KLCIFFYFPL 83
+ I + F NF F+++ + C++FY L
Sbjct: 29 VIILSVIFINFFFFYLCRCCVYFYHTL 55
>SPAC227.07c |pab1||protein phosphatase regulatory subunit
Pab1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -1
Query: 459 PEGLAYDTFNRLFRSW*PLKVSIARAASSSLVKFTK 352
P+ L Y+ L SW P + S+A AA+++L F+K
Sbjct: 428 PDNLDYNK-KILHASWHPFEDSVAIAATNNLFVFSK 462
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 583 LISQYVFLYYPPVFPEYRLQLIV 515
L+SQYV L+Y P F L+ ++
Sbjct: 599 LVSQYVILFYEPDFDSIFLRRVL 621
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 5 HSNFCHLFQLYFLFHLKAVYFFLFSIKCNWYK 100
HSN+ F L + +L ++ ++ S C WY+
Sbjct: 229 HSNYYAGFGLSYYLYLSSMKAYINSSGCLWYE 260
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,218
Number of Sequences: 5004
Number of extensions: 46990
Number of successful extensions: 234
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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