Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9b23
         (374 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0039 - 687711-688607,692336-693113,693414-693501,693761-69...    28   2.1  
03_05_0793 + 27755704-27756386,27756473-27757274,27757379-277576...    28   2.1  
06_03_1099 - 27585382-27586599,27587321-27587446,27587742-27587864     27   6.3  
09_06_0177 + 21365314-21366100,21367451-21367578,21367715-213678...    26   8.4  
06_02_0299 - 13969269-13969366,13969614-13969729,13970753-13970838     26   8.4  

>09_01_0039 -
           687711-688607,692336-693113,693414-693501,693761-694148,
           694176-694401,694527-694680,695073-695145
          Length = 867

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 52  RERRTQRQRVWNEETEMAEDSSH*FLYAVLW 144
           R   T R+R WN+  E+     H     +LW
Sbjct: 767 RSSSTARERAWNDRLELVPKEEHAAFLMILW 797


>03_05_0793 +
           27755704-27756386,27756473-27757274,27757379-27757634,
           27758355-27758566,27760494-27760709
          Length = 722

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
 Frame = +2

Query: 8   PRYMLIWCIGLRKFIVKDGLKDSEYG---MKKQRWLKIAHISFYTLFFGVVFSLLYLACR 178
           P Y L    GL  +++K G+    YG    K +   K +H++F     G   S   +   
Sbjct: 497 PEYDLHVICGLNPYVIKSGVSPLHYGDSSCKIRYKSKYSHVNFLASPRGSHSSDTVIPTL 556

Query: 179 IFMYLCNLNTIAAQTL 226
            F   CN N I  + L
Sbjct: 557 FFAECCNDNDITDEPL 572


>06_03_1099 - 27585382-27586599,27587321-27587446,27587742-27587864
          Length = 488

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +1

Query: 1   GLAALYADLVHRL---EKVHRERRTQRQRVWNEETEMA 105
           GLA + A L+ RL    +VHR RR     +W ++T +A
Sbjct: 294 GLAGILALLLCRLLSNSEVHRRRRQSPSGIWWQKTVLA 331


>09_06_0177 +
           21365314-21366100,21367451-21367578,21367715-21367870,
           21368006-21368196,21369392-21369434,21369537-21369627,
           21369859-21369935,21370278-21370366,21370474-21370657,
           21370885-21371138,21371465-21371567,21371646-21371977,
           21372060-21372504
          Length = 959

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 216 LKHLKYNNCIWVCRFYMLH*NVLS 287
           LKHL+  NC+  C+F++   N+L+
Sbjct: 189 LKHLRIVNCMMDCKFWIRTPNLLT 212


>06_02_0299 - 13969269-13969366,13969614-13969729,13970753-13970838
          Length = 99

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 124 FLYAVLWSRIFFVISRL 174
           FL A  W+R+F++ISRL
Sbjct: 2   FLRAKGWARVFYIISRL 18


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,719,419
Number of Sequences: 37544
Number of extensions: 134349
Number of successful extensions: 293
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)