Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9b20
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.3  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   4.3  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    26   4.3  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    26   5.7  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   9.9  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    25   9.9  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.9  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 23/82 (28%), Positives = 39/82 (47%)
 Frame = -3

Query: 577 SFSFGLNVSKKSLN*GMRTGDDPGIPQFVIIVSTNS*SNPLSSHRSVKKSYHSCQFSSVL 398
           S S   + S  +++ G+ +   P     V  + ++S S+P S+  S+  S  S  FSS  
Sbjct: 548 SSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSA- 606

Query: 397 QYFHHSTPVSVMVTFRSSRTLL 332
                S+P S+  +  SS T+L
Sbjct: 607 ---STSSPSSISSSISSSSTIL 625


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +3

Query: 261  SRLLDNKRDGNTMTLYRSDYWMRQSKVLDDRKVTMTDTGVLWWKYCKTELNWQEWYDFF 437
            S +L+ K   NT+  Y S++     KV DD + T    G+L   YC  E N + ++  +
Sbjct: 1280 SGVLEPKIAANTVNQYPSEWEKIDLKVFDDLETT---EGLL-SSYCSNEWNREVYHPLY 1334


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1004

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = -3

Query: 607  DFQITLFQNGSFSFGLNVSKKSLN*GMRTGDDPGIPQFVIIVSTNS*SNPLSSHRSVKKS 428
            DF+ ++ Q+ SF + L     S + G+      GIP  ++  +T    N    HR+ +K+
Sbjct: 912  DFETSVSQSISFLYKLVPGVASKSYGLNVARMAGIPFSILSRATEISENYEKKHRNARKN 971


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 493 RTAVYQGRHLFSYLSLEISSTHLNQKKNCRFEIV 594
           + A  QGR+ F Y SL+IS   L   K  +++++
Sbjct: 628 KDAEMQGRNAFEYDSLDISPFDLPDVKQKKYKLI 661


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = +3

Query: 378 VLWWKYCKTELNWQEWYDFFTDL----CELK--GLDQEFVETMMTNCGIPGSSPVLIPQF 539
           V WW      LN++   D FTDL     ++K  G     +  M+     P ++   IP++
Sbjct: 692 VEWWNKWWPSLNFRTMLDIFTDLSLKISDMKKAGHPASEIMAMIKTQKYPATNQPYIPKY 751

Query: 540 R 542
           R
Sbjct: 752 R 752


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -1

Query: 213 FPCFKLIVSTSILKFWSIVKFLKFTTCVIPIEIYISLNNIPIYCGCNFVFTLIK 52
           FP F+L        FW+ V    + +  + + I I+L  + ++    FV  LIK
Sbjct: 170 FP-FELTTCAITFTFWTDVNCAVWISIFLVVVIGINLFGVRVFGEVEFVLALIK 222


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 371 VSHGDLSVI*NFALTHPIIGTVKSHSITVSLIIEKT 264
           VS   LS   NFAL H     +K+    +S++ +KT
Sbjct: 462 VSFSPLSSTLNFALFHQAASKLKTGKSPLSIVTDKT 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,723
Number of Sequences: 5004
Number of extensions: 50490
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)