Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9b20
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0389 + 2779790-2779891,2780378-2781912,2782087-2782135,278...    28   7.8  
04_03_0651 - 18417856-18418109,18418203-18418314,18418579-184186...    28   7.8  

>06_01_0389 +
           2779790-2779891,2780378-2781912,2782087-2782135,
           2782620-2782683,2782755-2782843
          Length = 612

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 300 TLYRSDYWMRQSKVLDDRKVTMTDTGVL 383
           TLY  DYW  Q K +  R +T+   G++
Sbjct: 461 TLYELDYWPPQDKDVHHRSLTLPAVGLI 488


>04_03_0651 -
           18417856-18418109,18418203-18418314,18418579-18418631,
           18418910-18418988,18419077-18419213,18419295-18419405,
           18419509-18419561,18420265-18420326
          Length = 286

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -2

Query: 320 IIGTVKSHSITVSLIIEKTRKLVEL 246
           I GT ++ S+T SL++++TRKL  L
Sbjct: 174 ITGTTENDSVTESLLMQETRKLSTL 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,880,498
Number of Sequences: 37544
Number of extensions: 276262
Number of successful extensions: 585
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)