Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9b20
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass...    28   5.3  
U88308-6|AAB42320.1|  180|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily ass...    28   6.9  
U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily ass...    28   6.9  
AF000264-5|AAC71122.1|  207|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z81476-4|CAB03923.1|  707|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 213 protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +3

Query: 210 EIMEEEEATLEGQFHEFSRLLDNKRDGNTMTLYRSDYWMRQSKVLDDR 353
           ++ E+E+  L   F+E   L  N++ G T  L  S  W +Q+++L DR
Sbjct: 304 QLQEDEDIKLSEGFNEEYVLSSNQKLGLTCALLESGNW-KQAQMLIDR 350


>U88308-6|AAB42320.1|  180|Caenorhabditis elegans Hypothetical
           protein C32E8.3 protein.
          Length = 180

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 297 MTLYRSDYWMRQSKVLDDRKVTMTDTGVLWWK 392
           MT    D W++ + VLD++ +T T TG+ + K
Sbjct: 32  MTGKNFDKWLKDAGVLDNKAITGTMTGIAFSK 63


>U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform b protein.
          Length = 1321

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 393 YCKTELNWQEWYDFFTDLCELK 458
           YC+ +LN   W+ +  D+C++K
Sbjct: 67  YCREKLNGVPWHGYTCDICKVK 88


>U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform a protein.
          Length = 1372

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 393 YCKTELNWQEWYDFFTDLCELK 458
           YC+ +LN   W+ +  D+C++K
Sbjct: 67  YCREKLNGVPWHGYTCDICKVK 88


>AF000264-5|AAC71122.1|  207|Caenorhabditis elegans Hypothetical
           protein F43E2.5 protein.
          Length = 207

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +3

Query: 306 YRSDYWMRQSKVLDDRKVTMTDTGVLWWKYCKTELNWQEWYDFFTDLCELKGLDQEF 476
           Y   YW RQ K+L D ++++ DT V   +   T+LN   +   F D  +L+ L +E+
Sbjct: 130 YHQKYWFRQKKILFD-ELSLLDTQVAEGELA-TKLN--AYCAGFQDFHDLERLAKEY 182


>Z81476-4|CAB03923.1|  707|Caenorhabditis elegans Hypothetical
           protein C25F9.5 protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 112 INLNWNHAGCKFQEFY 159
           +++NWNH  CK   F+
Sbjct: 487 VDVNWNHTACKHDSFF 502


>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
           protein Y81G3A.3 protein.
          Length = 1696

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 426 YDFFTDLCELKGLDQEFVE 482
           Y+    LCE+KGLDQ  VE
Sbjct: 254 YNEIQKLCEIKGLDQNLVE 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,889,997
Number of Sequences: 27780
Number of extensions: 276456
Number of successful extensions: 610
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)