Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9b19
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    27   1.7  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    27   2.2  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    27   2.9  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    26   3.9  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    25   9.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.0  

>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -3

Query: 381 GKTSDYFCPKQSLRGPIKDVSH 316
           G+TS  F P  SL  PI DVSH
Sbjct: 243 GRTSTTFAPFTSLAIPIDDVSH 264


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 412 ATINYPFEKGPLSPRFRGEHALRRYPS 492
           +T  +P+ KG    RF   H+L R PS
Sbjct: 85  STSPFPYLKGSFDDRFSSTHSLTRQPS 111


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 478 RRYPSGEERCIACKLCEAICPAQAITIEAEERCDGSR 588
           +R+    + C+ CK C+   P Q I  +  +  DG +
Sbjct: 592 KRFVINSQNCVHCKTCDIKDPLQGIQWKTPQGGDGPK 628


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 256 PRTKYDVQYTYINDQPPSTTMRD 324
           P   Y+VQ   +ND+PP  T RD
Sbjct: 550 PIALYEVQRPRLNDRPPLYTARD 572


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 359 VQNKVCEARSKMSLIVVDGGWSFMYVYCTS 270
           VQ K CE    +S    DGGWS  Y+ C +
Sbjct: 603 VQKKACEFL--LSKQRPDGGWSESYMACVT 630


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = +1

Query: 181  PSSNFPPHPAQSCAQGPQRPPFYCCPRTKYDVQYTYINDQPPST 312
            PSS  PP P  +    P  PP    P  K  V    +   PPST
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPV--PPPST 1215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,621
Number of Sequences: 5004
Number of extensions: 59895
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)