Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9b19
(626 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00037-2|AAA50662.1| 212|Caenorhabditis elegans Hypothetical pr... 178 3e-45
AF140272-1|AAD34863.1| 212|Caenorhabditis elegans NADH oxidored... 178 3e-45
Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 30 1.6
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z81514-6|CAB62802.1| 712|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 28 4.8
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 28 4.8
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 28 4.8
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 28 4.8
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 27 8.3
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 27 8.3
AF016446-2|AAC24165.1| 70|Caenorhabditis elegans Hypothetical ... 27 8.3
>U00037-2|AAA50662.1| 212|Caenorhabditis elegans Hypothetical
protein T20H4.5 protein.
Length = 212
Score = 178 bits (433), Expect = 3e-45
Identities = 80/92 (86%), Positives = 84/92 (91%)
Frame = +1
Query: 349 LFWTEIVRGFAVTLGHLFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCE 528
+F+TE+ RGF V LGH+F EPATINYPFEKGPLS RFRGEHALRRYPSGEERCIACKLCE
Sbjct: 61 VFFTELFRGFGVMLGHVFMEPATINYPFEKGPLSSRFRGEHALRRYPSGEERCIACKLCE 120
Query: 529 AICPAQAITIEAEERCDGSRRATRYDIDMTKC 624
AICPAQAITIEAE R DGSRR TRYDIDMTKC
Sbjct: 121 AICPAQAITIEAETRPDGSRRTTRYDIDMTKC 152
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 463 GEHALRRYPSGEERCIACKLCEAICPAQAI 552
G RY +CI C LC+ CP AI
Sbjct: 138 GSRRTTRYDIDMTKCIYCGLCQEACPVDAI 167
>AF140272-1|AAD34863.1| 212|Caenorhabditis elegans NADH
oxidoreductase complex I 23.8kDa subunit protein.
Length = 212
Score = 178 bits (433), Expect = 3e-45
Identities = 80/92 (86%), Positives = 84/92 (91%)
Frame = +1
Query: 349 LFWTEIVRGFAVTLGHLFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCE 528
+F+TE+ RGF V LGH+F EPATINYPFEKGPLS RFRGEHALRRYPSGEERCIACKLCE
Sbjct: 61 VFFTELFRGFGVMLGHVFMEPATINYPFEKGPLSSRFRGEHALRRYPSGEERCIACKLCE 120
Query: 529 AICPAQAITIEAEERCDGSRRATRYDIDMTKC 624
AICPAQAITIEAE R DGSRR TRYDIDMTKC
Sbjct: 121 AICPAQAITIEAETRPDGSRRTTRYDIDMTKC 152
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 463 GEHALRRYPSGEERCIACKLCEAICPAQAI 552
G RY +CI C LC+ CP AI
Sbjct: 138 GSRRTTRYDIDMTKCIYCGLCQEACPVDAI 167
>Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical
protein C03E10.5 protein.
Length = 623
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 452 GERGPFSKG*LIVAGSLNKCPKVTAKPRTISVQNKVCEARSKMSLIVV 309
GE+ K ++V G L KCP T P TIS + + + +S ++
Sbjct: 127 GEKSSGEKSKMVVCGKLGKCPATT--PSTISTTSGASSSTASVSSTIL 172
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 160 NPGEN-RRPSSNFPPHPAQSCAQGPQRPP 243
NPG ++P P P Q C QGP PP
Sbjct: 128 NPGRPPQQPCDPITPPPCQPCPQGPPGPP 156
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 160 NPGEN-RRPSSNFPPHPAQSCAQGPQRPP 243
NPG ++P P P Q C QGP PP
Sbjct: 95 NPGHPPQQPCDPITPPPCQPCPQGPPGPP 123
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 160 NPGEN-RRPSSNFPPHPAQSCAQGPQRPP 243
NPG ++P P P Q C QGP PP
Sbjct: 128 NPGRPPQQPCDPITPPPCQPCPQGPPGPP 156
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +1
Query: 136 FRHKSDIRNPGENRRPSSNFPPHPAQSCAQGPQRPPF-YCCPRTKYDVQYTYINDQPP 306
+ H + P + P ++F P P Q Q P PP + P +Y + Y PP
Sbjct: 57 YEHPAQQHPPQHHSVPPNSFAPPPGQHHPQHPGMPPMEWRPPGAEYQMPPGYPAGYPP 114
>Z81514-6|CAB62802.1| 712|Caenorhabditis elegans Hypothetical
protein F26F2.7 protein.
Length = 712
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +1
Query: 232 QRPPFYCCPRTKYDVQYTYINDQPPSTTMRDIFD-RASQTLFWTEIVRGFAVTLGHL-FK 405
+R C +T +Q + + S D+F + + FW E+ RG+++ H F
Sbjct: 106 ERLTVICDSQTSSPLQTPSPSQERDSAPFADVFQPKGFFSFFWEELTRGYSLHNDHARFS 165
Query: 406 EPATINYPFEKGPL 447
E Y F + PL
Sbjct: 166 EKRRKVYAFLRIPL 179
>Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical
protein C38D9.3 protein.
Length = 1496
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 205 GEGGNSNWDGGSHQDYEYPICDENKK 128
G+ G+ N SH +Y+Y I +N+K
Sbjct: 631 GQNGSDNKRSNSHTEYKYKITQQNEK 656
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +1
Query: 142 HKSDIRNPGENRRPSSNFPPHPAQSCAQGPQRPPFYCCPRTKYDVQYTYINDQPPSTT 315
H S+ N G R P+S+ P+P PQ+PP P + + + + N QPP T
Sbjct: 156 HGSNYDNYG--REPASSRRPYP-------PQQPPSTSAPHSSPNNRTSLYNPQPPPKT 204
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 160 NPGEN-RRPSSNFPPHPAQSCAQGPQRPP 243
NPG ++P P P + C QGP PP
Sbjct: 128 NPGRPPQQPCEPITPPPCKPCPQGPPGPP 156
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 160 NPGEN-RRPSSNFPPHPAQSCAQGPQRPP 243
NPG ++P P P + C QGP PP
Sbjct: 128 NPGRPPQQPCEPITPPPCKPCPQGPPGPP 156
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 160 NPGEN-RRPSSNFPPHPAQSCAQGPQRPP 243
NPG ++P P P + C QGP PP
Sbjct: 133 NPGRPPQQPCEPITPPPCKPCPQGPAGPP 161
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 75 SRTVYMYINKKTKRVFCYFLFS 140
S VY Y++ +TK+ FCY LFS
Sbjct: 74 SAVVYYYLHNETKKHFCY-LFS 94
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 163 PGENRRPSSNFPPHPAQSCAQGPQRPP 243
PGE RP + P P GPQ PP
Sbjct: 203 PGEPGRPGDDAPSEPLIPGEPGPQGPP 229
>AF016446-2|AAC24165.1| 70|Caenorhabditis elegans Hypothetical
protein C02E7.6 protein.
Length = 70
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 196 PPHPAQSCAQGPQRPPFYCCPRTKY 270
PP PA C G PP Y P Y
Sbjct: 32 PPPPACGCGGGAAPPPAYVAPAPAY 56
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,390,653
Number of Sequences: 27780
Number of extensions: 354425
Number of successful extensions: 1179
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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