Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9b14
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna polym...    28   5.7  
Z68303-3|CAA92638.1|  248|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z82055-2|CAB04844.1|  369|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AC024757-1|AAF59450.3|  490|Caenorhabditis elegans Hypothetical ...    27   9.9  

>L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna
           polymerase kappa) homologprotein 1 protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
 Frame = +1

Query: 49  CVDLVSEDSFYENITLGVT-KLLESDPRICNVSVERR-AP-CDRVALSNWEQRHSAVLPE 219
           C   +S++SF     LG+  +  ESDPR  ++SVER  +P  D   L    Q    +L E
Sbjct: 348 CFTPLSQESFLRT-ALGLPGRPSESDPRRKSISVERTFSPTSDFNILLEEHQEICRMLEE 406

Query: 220 DLRNFYGSSDGFQLTWHYKYSADEIL 297
           D+R   G   G  +T   K S+ ++L
Sbjct: 407 DVRK-SGIVGGKTVTLKLKLSSFDVL 431


>Z68303-3|CAA92638.1|  248|Caenorhabditis elegans Hypothetical
           protein ZK809.2 protein.
          Length = 248

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = +1

Query: 19  QSIFTLNMSFCVDLVSEDSFYENITLGVTKLLESDPRICNVSVER---RAPCDRVALSNW 189
           + ++   M FCVD+++++ +      G    LES+P      + R    A  D V L  W
Sbjct: 101 EGVYQKGMDFCVDMLNDNKWVHIFPEGKVCTLESEPLRFKWGIGRLVMDAKTDPVILPVW 160

Query: 190 EQRHSAVLP 216
            +    V P
Sbjct: 161 CKEMEKVWP 169


>Z82055-2|CAB04844.1|  369|Caenorhabditis elegans Hypothetical
           protein T26H2.2 protein.
          Length = 369

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 545 SRTILEWLSCIWGYQGG 595
           SRT+   LSC W YQGG
Sbjct: 316 SRTVSYNLSCTWTYQGG 332


>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical
           protein F46H5.4 protein.
          Length = 2018

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 25  IFTLNMSFCVDLVSEDSFYENITLGVTKLLESDPR 129
           IF+ +      + ++D F EN   GV  L  +DPR
Sbjct: 747 IFSCSTEVISSVHAQDEFLENFLAGVASLSSNDPR 781


>AC024757-1|AAF59450.3|  490|Caenorhabditis elegans Hypothetical
           protein Y37E11AL.5 protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +1

Query: 142 SVERRAPCDRVALSNWEQRHSAVLPEDLRNFYGSSDGFQLTWHYKYSADEILPVGSI 312
           S+ER+    R  L + + +        + +   +  GF    HY+YS  E +P GS+
Sbjct: 408 SLERKRDISRALLEHVDTKSDITSKHVVVDGGFTEAGFTPATHYQYSPSEYIPPGSM 464


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,465,513
Number of Sequences: 27780
Number of extensions: 322434
Number of successful extensions: 690
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)