Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9b12
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 34 0.023
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 31 0.12
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 31 0.12
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 31 0.21
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 30 0.28
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 29 0.64
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 29 0.85
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 28 1.1
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 27 2.0
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ... 27 2.6
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 2.6
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 27 3.4
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 3.4
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 26 4.5
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 26 6.0
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 26 6.0
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 26 6.0
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 7.9
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 25 7.9
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 7.9
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida... 25 7.9
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.9
SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr ... 25 7.9
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 33.9 bits (74), Expect = 0.023
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Frame = +2
Query: 137 EIENDEFYSKFLNDSIKPLVGENLSVTDQVTKLAQGIEKLGKSLEK-----QVLAKHND- 298
+ EN + L D+++ L+ ++++ +V++L + KL L+ V ND
Sbjct: 823 DCENLTQQNMTLIDNVQKLMHKHVNQESKVSELKEVNGKLSLDLKNLRSSLNVAISDNDQ 882
Query: 299 LLTQASHISDLENTLESVQSQVQNLLRGAEKLKERVHTPYYALENQTIMLERVQTTCNLL 478
+LTQ + +S ++LE +Q+ + L+ E K+ +HT EN+ + + + T L
Sbjct: 883 ILTQLAELSKNYDSLEQESAQLNSGLKSLEAEKQLLHT-----ENEELHIRLDKLTGKLK 937
Query: 479 RHASKILTLWNKL 517
SK L KL
Sbjct: 938 IEESKSSDLGKKL 950
Score = 32.3 bits (70), Expect = 0.069
Identities = 46/203 (22%), Positives = 90/203 (44%), Gaps = 14/203 (6%)
Frame = +2
Query: 119 AKDVCVEIENDEFYS------KFLNDSIKPLVGENLSVTDQV----TKLAQ-GIEKLGKS 265
AK V EN++ +S K LN+S + L + ++T Q+ +KL Q +E+
Sbjct: 591 AKSVMQLKENEQNFSSLDTSFKKLNESHQELENNHQTITKQLKDTSSKLQQLQLERANFE 650
Query: 266 LEKQVLA-KHNDLLTQASHISDLENTLESVQSQVQNLLRGAEKLKERVHTPYYALENQTI 442
++ L+ ++NDL T+ + + +L Q V +L + + LKE + AL +
Sbjct: 651 QKESTLSDENNDLRTKLLKLEESNKSLIKKQEDVDSLEKNIQTLKEDLRKSEEALRFSKL 710
Query: 443 MLERVQTTCNLLRHASKILTLW-NKLR-TIKDNPSKEAIILFDLNELIGDYDFQGIIILE 616
+ ++ + L+ + L N L ++ D + AI+ +L + D + +
Sbjct: 711 EAKNLREVIDNLKGKHETLEAQRNDLHSSLSDAKNTNAILSSELTK--SSEDVKRLTANV 768
Query: 617 EILSAVNQRRNELLNESTNSLQS 685
E L+ ++ + NS QS
Sbjct: 769 ETLTQDSKAMKQSFTSLVNSYQS 791
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 31.5 bits (68), Expect = 0.12
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +2
Query: 269 EKQVLAKHNDLLTQASHISDLENTLESVQSQVQNLLRGAEKLKE 400
+KQ+ + +N L +A HI LENT +S++ ++N R +LKE
Sbjct: 528 QKQLKSANNTLHVRAKHIQILENTNQSLKKNLEN-GRAEFRLKE 570
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 31.5 bits (68), Expect = 0.12
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = +2
Query: 161 SKFLNDSIKPLVGENLSVTDQVTKLAQGIEKLGKSLEKQVLAKHNDLLTQASHISDLENT 340
S+ L DS L G+NLS DQV + + + S++K++ K LL + + LE
Sbjct: 326 SQLLLDSTVGLDGKNLSQHDQVLR-EDRLRAIELSVQKEIEEKRRQLLAREEALRALEEK 384
Query: 341 LESVQSQVQN 370
L + + + N
Sbjct: 385 LAASTAAMAN 394
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 30.7 bits (66), Expect = 0.21
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Frame = +2
Query: 149 DEFYSKFLNDSIKPLVGENLSVTDQVTKLAQGIEKLGKSLEKQVLAKHN--DLLTQASHI 322
+ + +FL + K L+ Q++++ + +K KSLE+ K N +LL +
Sbjct: 24 NSIFDRFLQEERKKLLNNKNEYLRQLSEINEAQKKAEKSLEQTEARKQNFTELLEKEHEE 83
Query: 323 SDL-ENTLESVQSQVQNLLRGAEKLKERV 406
+ E + S Q ++ +L+ +KL E +
Sbjct: 84 QAITEQEIFSFQEKLDAMLKRKQKLSEEL 112
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 30.3 bits (65), Expect = 0.28
Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 4/145 (2%)
Frame = +2
Query: 260 KSLEKQVLAKHNDLLTQASHISDLENTLESVQSQVQNLLRGAEKLKERVHTPYYALENQT 439
+ ++++ D QAS + LEN L S+ + + L+ ++ KE+ L+
Sbjct: 323 RKIQRKAAEIEKDYSDQASTLQVLENQLTSLSAAEKEFLKDMQE-KEQ-------LKGLR 374
Query: 440 IMLERVQTTCNLLRHASKI-LTLWNKLRTIKDNPSKEAIILFDLNELIGDYDFQGIIILE 616
++ E + L A K+ L KL+T+ N + L ++GD + + I L
Sbjct: 375 LLPEDKEEYEGLRSEADKLNSNLLFKLQTLNRNIKVTSQSKDSLTSIVGDLESK-IKSLH 433
Query: 617 EILSAVNQRRNELL---NESTNSLQ 682
E +S+++ R +LL NE SL+
Sbjct: 434 ESVSSLDTERADLLAKINEKIESLE 458
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 29.1 bits (62), Expect = 0.64
Identities = 21/95 (22%), Positives = 40/95 (42%)
Frame = +2
Query: 233 LAQGIEKLGKSLEKQVLAKHNDLLTQASHISDLENTLESVQSQVQNLLRGAEKLKERVHT 412
L +E SL+K ND + +S L ++ + +++ + E+ KE VH
Sbjct: 554 LINDVESSQSSLDKL----RNDAEENRNILSSKLKVLSDLKGEKKDVSKNIERKKETVHN 609
Query: 413 PYYALENQTIMLERVQTTCNLLRHASKILTLWNKL 517
Y L + LE ++ + + R +L +L
Sbjct: 610 TYRNLMSNRTKLEEMKASLSSSRSRGNVLESLQRL 644
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 28.7 bits (61), Expect = 0.85
Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 3/155 (1%)
Frame = +2
Query: 233 LAQGIEKLGKSLEKQVLAKHNDLLTQASHISDLENTLESVQSQVQNLLRGAEKLKERVHT 412
L Q ++ L +S++ + N L+ Q L + S ++ G +ER
Sbjct: 123 LQQNVQNLFQSVQLNI-NNPNFLIMQGRITKVLNMKATEILSMIEEA-SGTRMFEERKEK 180
Query: 413 PYYALENQTIMLERVQTTCNLLRHASKILTLWNKLRTIKDNPSKEAIILFDL---NELIG 583
+ ++ + +E + T LLR +I KLRT K + I DL + L
Sbjct: 181 AFRTMQRKEAKVEEINT---LLRE--EIEPRLTKLRTEKKTFLEYQHIYNDLERLSHLCT 235
Query: 584 DYDFQGIIILEEILSAVNQRRNELLNESTNSLQSS 688
YD+ + + E L+ +++ + E +SLQ+S
Sbjct: 236 AYDYYKLSLKVEELTVQASQKHSHIAEMESSLQTS 270
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +2
Query: 326 DLENTLESVQSQVQNLLRGAEKLKERVHTPYYALENQTIMLERVQTTCNLLRHASKILTL 505
+++NT E++ V+ EKL E + T LE QT + E+ LL + K+ L
Sbjct: 614 EIDNTKEALDLSVKERSIQEEKLNESLKTSKTNLEEQTQLAEKYHE--ELLDNQQKLYDL 671
Query: 506 WNKLRTIKDN 535
+L K N
Sbjct: 672 RIELDYTKSN 681
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +2
Query: 269 EKQVLAKHNDLLTQASHISDLENTLESVQSQVQNLLRGAEKLKERVH 409
E VL K + + +A+ + + T+ES +VQN+ ++K K++++
Sbjct: 46 ETTVLTKKDVEVEEANGVEEAAETIESDTKEVQNIKPKSKKKKKKLN 92
>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 451
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 363 TCDCTDSNVFSKSEM*LACVRRSL 292
T C D+N + ++ +AC+RRSL
Sbjct: 315 TISCLDTNFLAIKDIFIACIRRSL 338
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.1 bits (57), Expect = 2.6
Identities = 31/152 (20%), Positives = 65/152 (42%), Gaps = 8/152 (5%)
Frame = +2
Query: 116 EAKDVCVEIENDEFYSKFLNDSIKPLVGENLSVTDQVTKLAQGIEKLGKSLEKQVLAKHN 295
E + + I + E S +N +I L + +++TD+ + + +EKL + ++V +
Sbjct: 262 EYEQQMITIRHLESQSDIINTTINDLKSQ-MTITDESS---EDLEKLHSNFAEKVKEEQE 317
Query: 296 DLLTQASHISDLENTLESVQSQVQNLLRGAEKLKERVHTPYYALENQTIMLERVQTTCN- 472
+ SDLE+ L+S + ++ L K++ + + ++ M+ + N
Sbjct: 318 LYKSLEKKRSDLESLLKSRRELLEKLTGDLGKIQGEIESLEKLKVKKSTMINEIVHRYNI 377
Query: 473 -------LLRHASKILTLWNKLRTIKDNPSKE 547
++ SK +L NK I KE
Sbjct: 378 NEINEEGIMTEVSKYASLVNKNYEISSGKLKE 409
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/108 (15%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Frame = +2
Query: 143 ENDEFYSKF--LNDSIKPLVGENLSVTDQVTKLAQGIEKLGKSLEKQVLAKHNDLLTQAS 316
+N + Y++ L + + L+ + + +++ Q +E+ +++++ + + + S
Sbjct: 266 QNQDLYNQTEALKSTNEELINQ-IKSAEELDSAIQVLEERYRTMQRDEVKFQSAMSGMKS 324
Query: 317 HISDLENTLESVQSQVQNLLRGAEKLKERVHTPYYALENQTIMLERVQ 460
+ N ++ +Q ++ + LKE+ + Y +ENQ I + +
Sbjct: 325 KMESRTNLMKQLQVNIEEKESQLQLLKEKRDSLKYQVENQDISISEFE 372
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/93 (20%), Positives = 36/93 (38%)
Frame = +2
Query: 173 NDSIKPLVGENLSVTDQVTKLAQGIEKLGKSLEKQVLAKHNDLLTQASHISDLENTLESV 352
N+S+K + D +T Q + + L++Q L I L+N +
Sbjct: 100 NESLKTNLENQNKRFDALTTENQSLRRANSELQEQSKIASEQLSIAKDQIEALQNENSHL 159
Query: 353 QSQVQNLLRGAEKLKERVHTPYYALENQTIMLE 451
QVQ+ + ++ER +A + + E
Sbjct: 160 GEQVQSAHQALSDIEERKKQHMFASSSSRVKEE 192
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 425 LENQTIMLERVQTTCNLLRHASKILTLWNKLRTIKDNPSKEAIILFDLNELIGDY 589
L ++ + ER+ + A+KIL + D PS + +I FDL DY
Sbjct: 288 LHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDY 342
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/77 (20%), Positives = 36/77 (46%)
Frame = +2
Query: 449 ERVQTTCNLLRHASKILTLWNKLRTIKDNPSKEAIILFDLNELIGDYDFQGIIILEEILS 628
++VQ NL+R A+K + LW + I + + ++ + + + + + D+ ++ E +
Sbjct: 831 DKVQENYNLIRIAAKFMLLWTQEEFIGFSKALDSFLSENDDLIYKNLDYVAPLLFECMQF 890
Query: 629 AVNQRRNELLNESTNSL 679
N N S + L
Sbjct: 891 TSTTNANMFSNNSISVL 907
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.8 bits (54), Expect = 6.0
Identities = 23/131 (17%), Positives = 55/131 (41%)
Frame = +2
Query: 152 EFYSKFLNDSIKPLVGENLSVTDQVTKLAQGIEKLGKSLEKQVLAKHNDLLTQASHISDL 331
+F + FL+D ++ K ++ S E+++L ++L + + +
Sbjct: 162 DFENSFLSDVSDAFTESLRGRINEAEKEIDARLEVINSFEEEILGLWSELGVEPADVPQY 221
Query: 332 ENTLESVQSQVQNLLRGAEKLKERVHTPYYALENQTIMLERVQTTCNLLRHASKILTLWN 511
E LES ++ ++ E + + + + E+ + + +L S++ LWN
Sbjct: 222 EQLLESHTNRPNDVYVTQELIDQ------LCKQKEVFSAEKEKRSDHLKSIQSEVSNLWN 275
Query: 512 KLRTIKDNPSK 544
KL+ + S+
Sbjct: 276 KLQVSPNEQSQ 286
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 302 LTQASHISDLENTLESVQSQVQNLLRGAEKLKERVHT 412
L A H + T ++++ VQ++ R +EKLKER+ T
Sbjct: 457 LNLAFHHYGVNATFKALEQLVQSI-RDSEKLKERLET 492
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.4 bits (53), Expect = 7.9
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +2
Query: 170 LNDSIKPLVGE----NLSVTDQVTKLAQGIEKLGKSLEKQVLAKHNDLLTQASHISDLEN 337
L SIK + + +LS+ + +L + L +E+ +++K ND ++ HIS L +
Sbjct: 499 LETSIKTYISDIYFADLSLDEIREELDARLPLLKSIVERYLISKKNDNNNESIHISRLLD 558
Query: 338 TLESVQS 358
ES+ S
Sbjct: 559 IEESIWS 565
>SPAC6F6.12 |||autophagy associated protein
Atg24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +2
Query: 224 VTKLAQGIEKLGKSLEKQVLAKHNDLLTQASHISDLENTLESVQSQVQNLLR 379
++ L I+KL + LEK + + + D+ Q ++ L+ L+ +QN L+
Sbjct: 190 ISNLEGSIQKLLR-LEKALESDYEDVSIQFDRLASLDQALDVPIESIQNALQ 240
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 7.9
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +2
Query: 248 EKLGKSLEKQVLAKHNDLLTQASHISD--LENTLESVQSQVQNLLRGAEKLKERVHTPYY 421
+ L + + ++ L +H T A I++ L+ T +S V + L G E ++ V Y
Sbjct: 981 DDLSEEMIEESLLRHLTYAT-AKLITETFLQITPTQSRSNVSSSLIGKETVEGPVKLSEY 1039
Query: 422 ALENQTIMLERVQTTCNLL 478
L+N I + T C+LL
Sbjct: 1040 VLDNAIICEPLLCTLCHLL 1058
>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
imidazole acetol phosphate transaminase
His3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 533 NPSKEAIILFDLNELIGDYDFQGIIILEEI---LSAVNQRRNELLNESTN 673
NP+ +A+ L D+ +++ + GI++++E SA + L+NE N
Sbjct: 165 NPTAKALKLEDIKKILEHPTWNGIVVVDEAYIDFSAPDMSALTLVNEYPN 214
>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 7.9
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +2
Query: 251 KLGKSLEKQVLAKHNDLLTQASHISDLENT---LESVQSQ-VQNLLRGAEKLKERVHTPY 418
KL KSL K + N L + I D+ENT LE ++ Q + LR + L +
Sbjct: 58 KLLKSLPKLSSLEENKLTKLKAPIEDMENTKKELEEIRKQSTETELRYLKSLSNTLSFGT 117
Query: 419 YALENQ 436
+L N+
Sbjct: 118 LSLSNE 123
>SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 25.4 bits (53), Expect = 7.9
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +2
Query: 98 IKPMKMEAKDVCVEIEND-EFYSKFLNDSIKPLVGENLSVTDQVTKLAQGIEKLGKSLEK 274
IK +K + +D+ V+ +N+ E + D I L + + L +E+ +SLEK
Sbjct: 31 IKNLKTQIEDI-VDAKNECELLDEDDGDDIPALKVGDAFFQVSLPVLLDQLEQSEESLEK 89
Query: 275 QVLAKHNDLLTQASHISDLENTLES 349
QV + + + I +L++ L S
Sbjct: 90 QVDVLRSSMEKDETRIQELKSMLYS 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,077
Number of Sequences: 5004
Number of extensions: 62785
Number of successful extensions: 216
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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