Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9a23
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    33   0.035
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c...    28   1.0  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    28   1.0  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    28   1.0  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    27   1.8  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    27   1.8  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    26   5.3  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    25   7.1  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   7.1  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    25   9.3  
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        25   9.3  

>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 33.1 bits (72), Expect = 0.035
 Identities = 20/66 (30%), Positives = 35/66 (53%)
 Frame = +3

Query: 165 LKTLRLSFADFSNLPDIKKLNAVRTVEKTIDNNTSIFVESPIHVKIQPIDVNDLNAHNKL 344
           LKT  +SF +   LPD     AV  +++T  +N SI +  PI +  Q +DV+      + 
Sbjct: 584 LKTNSMSFGELECLPDHMTKAAVDRIKRTGYDNDSIILSGPI-ITEQDVDVSINRIRKEK 642

Query: 345 TMTLYS 362
           + T+++
Sbjct: 643 SNTIFT 648


>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 291

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -1

Query: 349 IVSLLCAFK--SFTSMGWILTCMGLSTKILVLLSIVFSTVLTAFNFFISGKL 200
           +++ LC F+    T +G  +T   +  ++ V LSI+   +   F+FF +G+L
Sbjct: 154 VIAALCHFRRPELTVVGEEVTVHPVEERVPVPLSILHMPICVTFSFFNNGEL 205


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 340 LLCAFKSFTSMGWILTCMGLSTKILVLLSIVFSTVLTAFNFFI 212
           L+C F S+  MG   TC      IL  L I     L  FN+++
Sbjct: 215 LMCDFCSYILMGLAWTCWPKVNIILQFLRIFGGIALIVFNYWV 257


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +3

Query: 261 NTSIFVESPIHVKIQPIDVNDLNAHNKLTMTLYSHGKDASDFQVKQTSKRLELLNKNTAS 440
           NTS  V+S +  +   +   DL A  K+   +  HG    D ++   SK+ ++ N +T  
Sbjct: 789 NTSFPVDSKLAFQSLDVSQPDLQAKQKIASQVMKHGLKPEDLKL-PPSKKKKIENLSTVQ 847

Query: 441 DKND 452
              D
Sbjct: 848 KPKD 851


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +3

Query: 192 DFSNLPDIKKLNAVRTVEKTIDNNTSIFVESPIHVKIQPIDVNDLNAHNKLTMTLYSHGK 371
           D+S++PD + +      E    N   I + + IH+ I  I+ +D NA N    TL+   K
Sbjct: 85  DWSSMPDDETITEDSEEETFNGNANEITIPANIHIPI--IEESD-NASNNKLCTLFKKSK 141

Query: 372 DAS-DF-QVK 395
             + DF Q+K
Sbjct: 142 QPNLDFLQIK 151


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +3

Query: 408 RLELLNKNTASDKNDVCLIQVPYQLKVQVSTSDNASVHLSKLEGDEFIVKTQKGSCERER 587
           +LE+L K     +ND  ++ VPY       T   A  HL  LE  EF  K +       +
Sbjct: 222 KLEMLEKERIVVENDSFIVVVPYWALWPFETLLIAKEHLKSLE--EFEEKQKVDLASALK 279

Query: 588 YQSTEY*N 611
             +T+Y N
Sbjct: 280 MLTTKYDN 287


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/60 (21%), Positives = 26/60 (43%)
 Frame = +3

Query: 147 RHLHKVLKTLRLSFADFSNLPDIKKLNAVRTVEKTIDNNTSIFVESPIHVKIQPIDVNDL 326
           +H++K+L     S   F N P    +     ++  I  N  I  +    +++  +D +DL
Sbjct: 186 QHIYKILTLTPASLDSFQNRPPYIGITTFPNLQHCIKKNQPILKQFTSQLQLLIVDESDL 245


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 314 INGLDFNMYGTLHKNTRIVIYRLLDSPH 231
           IN  D  ++  + +NTRI++YRLL  P+
Sbjct: 224 INDCDCGLH--VCENTRILMYRLLQKPY 249


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -1

Query: 322 SFTSMGWILTCMGLSTKILVLLSIVFSTVLTAFN 221
           S +++ W++ C G    +++ +  +F TVL+ FN
Sbjct: 195 SISNVIWLI-CFGAPLFLVIFICYIFFTVLSFFN 227


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 325 KSFTSMGWILTCMGLSTKILVLLSIVFSTVLTAFNFFI 212
           +SFT  G I T    S  IL   ++VF   +TA  F +
Sbjct: 525 RSFTGTGSIFTISSSSRLILSFKTLVFGLGVTAMLFVL 562


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = +3

Query: 192 DFSNLPDIKKLNAVRTVEKTIDNNTSIFVESPIHV--KIQPIDVNDLNAHNKLTMTLYSH 365
           DFS + DI++L A R  +    +  SI V  P +     Q +   DL AH      L   
Sbjct: 131 DFSRIHDIRELMAFRGYKFPAVDEDSIAVMKPNNSLRSAQELAREDLEAHKAKLQELLRR 190

Query: 366 G 368
           G
Sbjct: 191 G 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,893
Number of Sequences: 5004
Number of extensions: 48471
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)