Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9a17
         (545 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    27   0.14 
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   3.0  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    22   4.0  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    22   4.0  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.3  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.3  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.3  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.3  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.3  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   9.3  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 0.14
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 174 IDATAACHDLYSQIRTGHSERENVIKNCILATAESVKKLKAVKEEKPN 317
           ID T   H +YS +  G   R   ++  +     ++KK  A+K + PN
Sbjct: 44  IDPTLCTHLIYSFVGLGDDSRIKHLEPNLDVNQGNLKKFNALKLKNPN 91


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 234 RENVIKNCILATAESVKKLKAVKEEK 311
           R  + +NC  A  + VK L+ ++EE+
Sbjct: 159 RSGIWENCRAAYEDIVKHLERLREER 184


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +3

Query: 177 DATAACHDLYSQIRTGHSERENVIKNCILATAESVKKLKAVKEEKPN 317
           D     H LY+ +        +V+ +  +   E +  L ++KE+ PN
Sbjct: 47  DPNLCTHILYAFVGLREDGSVSVLDDWEMTGLEELAHLMSLKEKNPN 93


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +3

Query: 177 DATAACHDLYSQIRTGHSERENVIKNCILATAESVKKLKAVKEEKPN 317
           D     H LY+ +        +V+ +  +   E +  L ++KE+ PN
Sbjct: 47  DPNLCTHILYAFVGLREDGSVSVLDDWEMTGLEELAHLMSLKEKNPN 93


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 4   YYRIS*VVKCIYISSIDYL*F 66
           YY  + +V C+ ISS+  L F
Sbjct: 213 YYFFNLIVPCVLISSMALLGF 233


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 4   YYRIS*VVKCIYISSIDYL*F 66
           YY  + +V C+ ISS+  L F
Sbjct: 213 YYFFNLIVPCVLISSMALLGF 233


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 4   YYRIS*VVKCIYISSIDYL*F 66
           YY  + +V C+ ISS+  L F
Sbjct: 213 YYFFNLIVPCVLISSMALLGF 233


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 4   YYRIS*VVKCIYISSIDYL*F 66
           YY  + +V C+ ISS+  L F
Sbjct: 213 YYFFNLIVPCVLISSMALLGF 233


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 4   YYRIS*VVKCIYISSIDYL*F 66
           YY  + +V C+ ISS+  L F
Sbjct: 213 YYFFNLIVPCVLISSMALLGF 233


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 239 KCNKKLYTGNCRISKKAKSSQ 301
           K  KKL+  N  ISKK +  Q
Sbjct: 503 KPTKKLHLKNSPISKKVRPPQ 523


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,868
Number of Sequences: 336
Number of extensions: 1499
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13411456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)