Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9a17
(545 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 32 0.063
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 29 0.34
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 29 0.34
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce... 29 0.59
SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr 1|||Ma... 27 2.4
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 26 3.2
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 26 3.2
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 26 4.2
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 4.2
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 25 5.5
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 25 5.5
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 25 7.3
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 7.3
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce... 25 7.3
SPAC22H12.01c |mug35|SPAC23G3.13c|sequence orphan|Schizosaccharo... 25 9.6
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ... 25 9.6
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 9.6
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 9.6
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 9.6
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 9.6
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 31.9 bits (69), Expect = 0.063
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Frame = +3
Query: 117 DKIVYALNTSIPTESFKAKIDATAACHDLYSQIRTGHSERENVIKNCILATAESVKKLKA 296
D++ L T + E+ KAK D+T+ +L Q++ +E +++ K E K++ A
Sbjct: 623 DELQKRLQT-LEEENNKAKEDSTSKTSNLLEQLKMTEAEVDSLRKE-----NEENKQVIA 676
Query: 297 VKEE---KPNDLEVLRNLKAEQKKLRLLQTELSVEEVIQEK 410
+KE K ND ++L N + E +L Q + +E V K
Sbjct: 677 LKESELVKSNDNKLLLNEQIESLNDQLSQLKTEMESVTTSK 717
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 29.5 bits (63), Expect = 0.34
Identities = 26/115 (22%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Frame = +3
Query: 81 RLDILKKMRILDDKIVYALNTSIPTESFKAKIDATAACHDLYSQIRTGHSE-RENVIKNC 257
RL L++ + D+IV + T+ + K ++ T H+L S ++ S+ ++V+K
Sbjct: 464 RLSTLEERKKAFDEIVEKILTNYGKHNAK-NMNFTQLLHELNSTLQLEISKLSKSVVKPS 522
Query: 258 ILATAESVKKLKAVKEEKPNDLEVLRNLKAEQKKLRLLQTELSVEEVIQEKTTKL 422
+ A ++ L A E + + L + QK+L +LQ + + + ++L
Sbjct: 523 LFALQAKLELLSAENEYFQSQITSLYQESSFQKRLLMLQLTVLIVLTVYMAVSRL 577
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 29.5 bits (63), Expect = 0.34
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 258 ILATAESVKKLKAVKEEKPNDLEVLRNLKAEQKKLRLLQTELSVEEVIQEKTTK-LFTEK 434
IL+ +S+KK + K ++ N + L+N++ KKL LS + V EK + L TE
Sbjct: 63 ILSAIQSMKKQQKDKLQQENKDQELKNIEESYKKLEEKTEHLSDDNVSLEKRVEYLETEN 122
Query: 435 CR 440
+
Sbjct: 123 TK 124
>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 28.7 bits (61), Expect = 0.59
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 228 SERENVIKNCI-LATAESVKKLKAVKEEKPNDLEVLRNLKAEQKKLRLLQTELSVEEVIQ 404
S+R + I + E K VK++ N E L +L +E + + +E +EE +Q
Sbjct: 4 SQRSQIKNEDISFVSQEDDSSKKFVKDDSENSEEELEDLNSEDEFYQSNSSEDEIEEEVQ 63
Query: 405 EKT 413
E T
Sbjct: 64 EST 66
>SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 26.6 bits (56), Expect = 2.4
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +3
Query: 255 CILATAESVKK-LKAVKEEKPNDLEVLRNLKAEQKKLRLLQTELSVEEVIQEK-TTKLFT 428
C L + S+ + + E +P L+ L E +LRLL+ + EV++EK T+ L
Sbjct: 78 CELIKSGSINSAICKLNELEPEILDTNSELLFELLRLRLLEL---IREVVEEKDTSDLAV 134
Query: 429 EKC 437
E+C
Sbjct: 135 ERC 137
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 3.2
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +3
Query: 261 LATAESVKKLKAVKEEKPNDLEVLRNLKAEQKKLRLLQTELSVEEVIQEKTTKLFTEKCR 440
+ + E + + K VKEEK + L KAE+ +L L + + VEE ++ KL + R
Sbjct: 7 IPSLEQLVQQKRVKEEKAARPKFLS--KAERARLALERRQKEVEEAKAKQNDKLLDLRKR 64
Query: 441 S 443
+
Sbjct: 65 T 65
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 245 YIFPFRMPCSYLRVK-IMTSCSSIN 174
Y+ PF++ C Y K +MTS + +N
Sbjct: 173 YLMPFQLACKYSNFKSLMTSYNKVN 197
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 4.2
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Frame = +3
Query: 84 LDILKKMRILDDKIVYALNTSIPTESFKAKI----DATAACHDLYSQIRTGHSERENVIK 251
+D K + LD+K+ N + +I D ++Y++ + IK
Sbjct: 70 IDSKDKEKPLDEKVKELENANKTLSDLVRRIQIQRDEAEQKAEIYNRDALNTKQEHLDIK 129
Query: 252 NCILATAESVKKLKAVKEEKPNDLEVLRNLKAEQKKLRLLQTELSVEEVIQEKTTK 419
+ + E+V KLK EE N ++LRN+ E + R EL ++ +Q+++ K
Sbjct: 130 KRLEKSDETVCKLK---EENENLQDMLRNVGNELVESRDEIKELIEKQKVQKESVK 182
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = +3
Query: 159 SFKAKIDATAACHDLYSQIRTGHSERENVIKNCILATAESVKKLKAVKEEKPNDLEVLRN 338
+ K K+ A D H +ENV+ I + ++ EE N + VLRN
Sbjct: 39 AIKTKVKDINALKDQLVLQEVNHEHKENVLTKKINFLEQQLQSSNNQAEESRNLISVLRN 98
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Frame = -3
Query: 246 LH-FPFQNALFVSESKDH 196
LH FPF N +F S S DH
Sbjct: 109 LHWFPFDNGIFTSSSFDH 126
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 239 KCNKKLYTGNCRISKKAKSSQRRK 310
K N LY+ NC+ SKK S ++ K
Sbjct: 1342 KSNLLLYSCNCKFSKKKPSDEQIK 1365
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 25.0 bits (52), Expect = 7.3
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +3
Query: 84 LDILKKMRILDD-KIVYALNTSIPTESFKAKIDATAACHDLYSQIRT--GHSERENVIKN 254
LD ++K + +IVY + ++P SF+ + D+Y Q+ + + N ++N
Sbjct: 697 LDYIRKCSTSKEARIVYIILQNLPNISFRYQKKICKLLLDIYPQLHSIDYQAPVANALQN 756
Query: 255 CILATAESVKKLKA-VKE 305
I T E + ++ VKE
Sbjct: 757 IIPFTYEKTESIEEFVKE 774
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 309 KPNDLEVLRNLKAEQKKLRLLQTELSVEEVIQEKTTKLFTE 431
K ND+E +N+K +++R L+ L E +Q + L TE
Sbjct: 234 KVNDVEQSQNVKVFTERIRFLENAL---EKVQREKDSLSTE 271
>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 255 CILATAESVKKLKAVKEEKPNDLEVLRNL 341
C+L E++ LK + +PN E L N+
Sbjct: 208 CLLRPEEALSSLKTALDSQPNYEEALSNM 236
>SPAC22H12.01c |mug35|SPAC23G3.13c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 318 DLEVLRNLKAEQKKLRLLQTELSVEEVIQEKTTKLF 425
D+E RNL E K L ++E++ E+T L+
Sbjct: 163 DVEESRNLVQEPKHRSKKYDRLGLDELVMEQTASLW 198
>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 258 ILATAESVKKLKAVKEEKPNDL 323
+L+T E++ K KAV +KP D+
Sbjct: 35 MLSTEENIVKAKAVSRKKPVDV 56
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 24.6 bits (51), Expect = 9.6
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 96 KKMRILDDKIVYALNTSIPTESFKAKIDATAACHDLY 206
+++ ILDD+ ++ ESF +KID T + H LY
Sbjct: 1162 ERLEILDDEAYRQISNMELKESFGSKID-TISKHLLY 1197
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 322 KSLGFSSLTAFSFFTDSAVASIQFFITFSLSE 227
K +GF F F+ + SI +IT+ ++E
Sbjct: 164 KGMGFEESEIFGAFSSIPIVSIDEYITWMITE 195
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 24.6 bits (51), Expect = 9.6
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +3
Query: 213 IRTGHSER-ENVIKNCILATAESVKKLKAVKEEKPNDLEVLRNLKAEQKKLRLLQTELSV 389
+RT S R I + L+ + + EE PN +RNL + R + S
Sbjct: 110 LRTIKSPRMTGYITSLCLSAILKFFSFRIISEESPNLALSMRNLSFAITQCRFESFDASQ 169
Query: 390 EEVIQEKTTKLFTEKCR 440
+E + + ++L E R
Sbjct: 170 DEAVLLRVSRLMEELLR 186
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 24.6 bits (51), Expect = 9.6
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 285 KLKAVKE-EKPNDLEVLRNLKAEQKKLRLLQTELSVEEVIQEKTTKL 422
++KA E E N L + N Q KL TEL + E TTKL
Sbjct: 735 RVKATSELESTNMLWISVNQTIPQTKLNEASTELIMPVTQNEVTTKL 781
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,602,582
Number of Sequences: 5004
Number of extensions: 24608
Number of successful extensions: 91
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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