Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9a17
(545 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 28 0.054
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 28 0.054
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 22 4.7
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 22 4.7
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 22 4.7
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 22 4.7
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 22 4.7
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 22 4.7
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 22 4.7
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 22 4.7
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 22 4.7
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 22 4.7
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 21 6.2
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 21 6.2
DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex det... 21 8.2
DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex det... 21 8.2
DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex det... 21 8.2
DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex det... 21 8.2
DQ325126-1|ABD14140.1| 174|Apis mellifera complementary sex det... 21 8.2
DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex det... 21 8.2
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 21 8.2
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 21 8.2
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 21 8.2
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 21 8.2
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 21 8.2
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 21 8.2
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 21 8.2
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 21 8.2
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 28.3 bits (60), Expect = 0.054
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 87 DILKKMRILDDKIVYALNTSIPTESFKAKIDATAACHDLYS 209
++LK+ +I+ ++I L+ SI +S ++D + C DL S
Sbjct: 438 EVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKRCKDLAS 478
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 28.3 bits (60), Expect = 0.054
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 87 DILKKMRILDDKIVYALNTSIPTESFKAKIDATAACHDLYS 209
++LK+ +I+ ++I L+ SI +S ++D + C DL S
Sbjct: 144 EVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKRCKDLAS 184
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 4.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 532 SKNY*FNVYNNN 497
S NY +N YNNN
Sbjct: 86 SNNYNYNNYNNN 97
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 4.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 532 SKNY*FNVYNNN 497
S NY +N YNNN
Sbjct: 86 SNNYNYNNYNNN 97
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 4.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 532 SKNY*FNVYNNN 497
S NY +N YNNN
Sbjct: 86 SNNYNYNNYNNN 97
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 4.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 532 SKNY*FNVYNNN 497
S NY +N YNNN
Sbjct: 86 SNNYNYNNYNNN 97
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.8 bits (44), Expect = 4.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 532 SKNY*FNVYNNN 497
S NY +N YNNN
Sbjct: 319 SNNYNYNNYNNN 330
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 4.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 532 SKNY*FNVYNNN 497
S NY +N YNNN
Sbjct: 319 SNNYNYNNYNNN 330
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 4.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 532 SKNY*FNVYNNN 497
S NY +N YNNN
Sbjct: 319 SNNYNYNNYNNN 330
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 4.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 532 SKNY*FNVYNNN 497
S NY +N YNNN
Sbjct: 319 SNNYNYNNYNNN 330
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 4.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 532 SKNY*FNVYNNN 497
S NY +N YNNN
Sbjct: 319 SNNYNYNNYNNN 330
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.8 bits (44), Expect = 4.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 532 SKNY*FNVYNNN 497
S NY +N YNNN
Sbjct: 308 SNNYNYNNYNNN 319
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.4 bits (43), Expect = 6.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -2
Query: 535 TSKNY*FNVYNNNSGKGKTSFSL 467
+S NY + YNNN K +++
Sbjct: 305 SSNNYNYKNYNNNYNSKKLYYNI 327
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 6.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -2
Query: 535 TSKNY*FNVYNNNSGKGKTSFSL 467
+S NY + YNNN K +++
Sbjct: 316 SSNNYNYKNYNNNYNSKKLYYNI 338
>DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.0 bits (42), Expect = 8.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 532 SKNY*FNVYNNNSGK 488
S NY ++ YNNN+ K
Sbjct: 86 SNNYNYSNYNNNNYK 100
>DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.0 bits (42), Expect = 8.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 532 SKNY*FNVYNNNSGK 488
S NY ++ YNNN+ K
Sbjct: 86 SNNYNYSNYNNNNYK 100
>DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.0 bits (42), Expect = 8.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 532 SKNY*FNVYNNNSGK 488
S NY ++ YNNN+ K
Sbjct: 86 SNNYNYSNYNNNNYK 100
>DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.0 bits (42), Expect = 8.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 532 SKNY*FNVYNNNSGK 488
S NY ++ YNNN+ K
Sbjct: 86 SNNYNYSNYNNNNYK 100
>DQ325126-1|ABD14140.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.0 bits (42), Expect = 8.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 532 SKNY*FNVYNNNSGK 488
S NY ++ YNNN+ K
Sbjct: 86 SNNYNYSNYNNNNYK 100
>DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.0 bits (42), Expect = 8.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 532 SKNY*FNVYNNNSGK 488
S NY ++ YNNN+ K
Sbjct: 86 SNNYNYSNYNNNNYK 100
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.2
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 532 SKNY*FNVYNNNSGKGKTSFSLHKYQGL 449
S NY ++ YNN + T++ +Y +
Sbjct: 86 SNNYKYSNYNNYNNNYNTNYKKLQYYNI 113
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.2
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 532 SKNY*FNVYNNNSGKGKTSFSLHKYQGL 449
S NY ++ YNN + T++ +Y +
Sbjct: 86 SNNYKYSNYNNYNNNYNTNYKKLQYYNI 113
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.2
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 532 SKNY*FNVYNNNSGKGKTSFSLHKYQGL 449
S NY ++ YNN + T++ +Y +
Sbjct: 86 SNNYKYSNYNNYNNNYNTNYKKLQYYNI 113
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.2
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 532 SKNY*FNVYNNNSGKGKTSFSLHKYQGL 449
S NY ++ YNN + T++ +Y +
Sbjct: 86 SNNYKYSNYNNYNNNYNTNYKKLQYYNI 113
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.2
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 532 SKNY*FNVYNNNSGKGKTSFSLHKYQGL 449
S NY ++ YNN + T++ +Y +
Sbjct: 86 SNNYKYSNYNNYNNNYNTNYKKLQYYNI 113
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.2
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 532 SKNY*FNVYNNNSGKGKTSFSLHKYQGL 449
S NY ++ YNN + T++ +Y +
Sbjct: 86 SNNYKYSNYNNYNNNYNTNYKKLQYYNI 113
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.2
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 532 SKNY*FNVYNNNSGKGKTSFSLHKYQGL 449
S NY ++ YNN + T++ +Y +
Sbjct: 86 SNNYKYSNYNNYNNNYNTNYKKLQYYNI 113
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.0 bits (42), Expect = 8.2
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 505 NNNSGKGKTSFS 470
NNNSG G T+ S
Sbjct: 539 NNNSGNGNTNSS 550
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,092
Number of Sequences: 438
Number of extensions: 1841
Number of successful extensions: 36
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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