Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9a16
         (147 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    24   3.1  
SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit L2...    23   4.1  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    23   5.5  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    23   5.5  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    23   7.2  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    22   9.6  

>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 120 IEVMFEISNSVINANTVRFIYNFYRLSFIRKNN 22
           I+V  E  N++ N NT+  +Y    L+ +RK +
Sbjct: 24  IDVFDEFLNAIGNENTITPVYADSSLTHLRKKS 56


>SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit
           L22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 108 FEISNSVINANTVRFIYNFYRLSFIRK 28
           F + +S I  N+  + Y F  LSF+R+
Sbjct: 14  FLVPSSTIGLNSKTYHYKFPLLSFVRE 40


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 75  TVRFIYNFYRLSFIRKNNSVN 13
           T++ +YNFYR  ++ + +  N
Sbjct: 561 TLQRLYNFYRFQYLEEQSLYN 581


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 102 ISNSVINANTVRFIYNFYRLSFIRKNNSVNKLY 4
           IS+    A+T+R +Y+F  LS        ++LY
Sbjct: 327 ISSGSSYASTLRKVYDFSELSLPTNGKDYDELY 359


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 63  IYNFYRLSFIRKNNSVNKLY 4
           +YN+  L FI++N  +  LY
Sbjct: 145 LYNYRILYFIKRNLGIGSLY 164


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
 Frame = +1

Query: 85  YYTVTNFEHY---FNKMY 129
           YYT++NFE Y   F K Y
Sbjct: 349 YYTLSNFEKYCDNFKKNY 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 501,421
Number of Sequences: 5004
Number of extensions: 6095
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 29
effective length of database: 2,217,362
effective search space used: 42129878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)