Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9a15
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual        33   0.033
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    31   0.13 
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    27   3.8  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   5.0  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   8.7  

>SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 33.5 bits (73), Expect = 0.033
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +1

Query: 433 LDLYLERIHKLNVMCGRRPNHVLVNEYTPGQGIMPHLDGNLFYPTITTISVGSHIVLKFL 612
           L+ Y+    K  +  G+    +++  Y PG GI+PH D  +F   +   S  S+  + F 
Sbjct: 97  LNDYIPSDFKQRLWKGQDAEAIIMQVYNPGDGIIPHKDLEMFGDGVAIFSFLSNTTMIFT 156

Query: 613 KP 618
            P
Sbjct: 157 HP 158


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 266 HITLVNSSQKPKNS*YCQTYMQH 334
           HIT+++ SQKP NS   + Y+QH
Sbjct: 662 HITMIHESQKPVNSRIWEQYLQH 684


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 349 TQLSNRRLQNWGGVPHNK 402
           +QLS   L  W GVPH K
Sbjct: 32  SQLSKHLLPQWSGVPHRK 49


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/61 (22%), Positives = 23/61 (37%)
 Frame = +1

Query: 256 EPTAYYISKFITEAEEQLILSNIYAAPKPKWTQLSNRRLQNWGGVPHNKGMIAETIPTWL 435
           + T+ Y+      A +  I+   Y+ P P+W   S     N          +   +PT L
Sbjct: 590 QSTSLYVQNSQPSASQLTIVDATYSQPPPRWESSSRDDKTNTSST--QPSQVDSLVPTQL 647

Query: 436 D 438
           D
Sbjct: 648 D 648


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1155

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = -3

Query: 525  LSWCIFIYQYMVWSSTTHNI*FVNSFEI*V*PSRYCFCY-HSLIVWDTSPI 376
            + +CIF Y    W + +HN+       I      Y   Y     VWDTS +
Sbjct: 885  VGFCIFEYNSSSWRNISHNLISAEVQSILWVNETYSSMYLAGKFVWDTSDV 935


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,457
Number of Sequences: 5004
Number of extensions: 64409
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)