Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9a15
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0028 - 14262607-14262783,14262886-14262932,14263014-142632...   132   4e-31
04_04_1056 - 30447791-30447850,30448020-30448085,30448299-304485...    47   1e-05
06_01_0275 + 2029542-2029689,2029777-2030295,2030657-2030754,203...    32   0.42 
03_05_1059 - 30020877-30021539,30022367-30022375                       32   0.42 
11_06_0608 - 25442883-25443206,25443420-25443623,25443831-254438...    31   0.74 

>10_08_0028 -
           14262607-14262783,14262886-14262932,14263014-14263281,
           14263374-14263486,14264362-14264400,14264531-14264591,
           14264685-14264834
          Length = 284

 Score =  132 bits (318), Expect = 4e-31
 Identities = 56/117 (47%), Positives = 77/117 (65%)
 Frame = +1

Query: 259 PTAYYISKFITEAEEQLILSNIYAAPKPKWTQLSNRRLQNWGGVPHNKGMIAETIPTWLD 438
           PT  Y+  FI++AE+  +L +IY AP PKW  L NRRLQNWGGV H KG++ + +P+WL 
Sbjct: 30  PTLLYVPGFISDAEQSQLLHHIYQAPAPKWKSLKNRRLQNWGGVVHEKGLLPQALPSWLT 89

Query: 439 LYLERIHKLNVMCGRRPNHVLVNEYTPGQGIMPHLDGNLFYPTITTISVGSHIVLKF 609
              +RI +   +     NHVL+NEY P QGIMPH DG  ++P +  IS+ S +V+ F
Sbjct: 90  KITDRICQWTGLFPSAINHVLINEYHPNQGIMPHQDGPAYFPVVAIISLASPVVIDF 146



 Score = 31.1 bits (67), Expect = 0.97
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +2

Query: 659 SFLLEPRSLLILQDKLFSXYLHSIEE 736
           S LL P SLLI +D+ ++ YLH I++
Sbjct: 193 SLLLMPCSLLIFKDQAYTDYLHGIQD 218


>04_04_1056 -
           30447791-30447850,30448020-30448085,30448299-30448583,
           30448744-30448869,30449068-30449154,30449273-30449695
          Length = 348

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
 Frame = +1

Query: 259 PTAYYISKFITEAEEQLILSNIYAAPKPKWTQLSNRRLQNWGGV-------PHNKGMIAE 417
           P  Y +  F+T AEEQ +L+ +   P   W  L+ RR+Q++G           +K  + E
Sbjct: 126 PGIYLVPDFVTAAEEQELLAAVDNRP---WKSLAKRRVQHYGFEFLYETRNVDSKQFLGE 182

Query: 418 TIPTWLDLYLERIHKL---NVMCGRRPNHVLVNEYTPGQGIMPHLD-GNLFYPTITTISV 585
            +P ++   +++I      N    +  + + VNEY  G G+ PH+D  + F   I ++S+
Sbjct: 183 -LPPFVSKIIDKIMSFPGANKCTSKLVDQLTVNEYPCGVGLSPHIDTHSAFEEMIFSLSL 241

Query: 586 GSHIVLKFLK 615
               +++F K
Sbjct: 242 AGPCIMEFRK 251


>06_01_0275 +
           2029542-2029689,2029777-2030295,2030657-2030754,
           2031718-2032028,2032560-2032631,2032729-2033398
          Length = 605

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +1

Query: 412 AETIPTWLDLYLERIHKLNVMCGRR-PNHVLVNEYTPGQGIMPHLDGNLFYPTITTISVG 588
           ++ +P+   + ++R+ + +V+     P+  +VN Y PG  I PH+D + F     T+S  
Sbjct: 270 SDPMPSLFKIMIKRLVRWHVLPKTCIPDSCIVNIYDPGDCIPPHIDSHDFVRPFCTVSFL 329

Query: 589 SHIVLKF 609
           S   + F
Sbjct: 330 SECNILF 336


>03_05_1059 - 30020877-30021539,30022367-30022375
          Length = 223

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 291 CDEFTNVICSRFSLYYYVIFNICYICHH-YSLVFI 190
           C  F ++ C R  ++   I  ICYIC H ++L FI
Sbjct: 134 CILFRSLFCFRLIIWLMFIIYICYICSHGFTLTFI 168


>11_06_0608 -
           25442883-25443206,25443420-25443623,25443831-25443859,
           25444335-25444557
          Length = 259

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 481 RRP--NHVLVNEYTPGQGIMPHLDGNLFYPTITTISVGSHIVLKF 609
           R+P  + ++ N Y PG+GI  H+D   F   I  +S+ S  V+ F
Sbjct: 136 RKPLFDQMIANRYEPGEGICAHVDLMRFDDGIAIVSLESPCVMHF 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,077,103
Number of Sequences: 37544
Number of extensions: 363744
Number of successful extensions: 725
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)