Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9a13
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    37   0.001
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ...    28   0.50 
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    27   1.5  
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    25   3.5  
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc...    25   3.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   6.1  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   6.1  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    24   8.1  
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos...    24   8.1  

>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 37.1 bits (82), Expect = 0.001
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
 Frame = +1

Query: 58  DGVVAHAKKGSLLIDSSTID-PNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAFMA 234
           +G+    +KG +++D      P+  ++   +A +KG+ F  + VSGG  GA+    + M 
Sbjct: 89  EGLAPLLEKGDIIVDGGNSHYPDTTRRCEELA-KKGILFVGSGVSGGEEGARYGP-SLMP 146

Query: 235 GGRKEDFERSLPLLKVMGAKQFH---C----GQIGSGQVAKLTNN 348
           GG    + R  P+ + + AK  +   C    G+ G+G   K+ +N
Sbjct: 147 GGNPAAWPRIKPIFQTLAAKAGNNEPCCDWVGEQGAGHYVKMVHN 191


>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 252

 Score = 28.3 bits (60), Expect = 0.50
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -1

Query: 281 TLRRGRDLSKSSLRPPAMKARVAF*APMTPPDTGASVNPSPFSRA 147
           T+R+GR  S SS  PP       +  P + P+TGAS +  PF+ +
Sbjct: 110 TMRQGRFPSSSSEFPPKNSK---YQLPGSMPNTGASSSQDPFTNS 151


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 308 PQWNCLAPITLRRGRDLSKSSLRPPAMK 225
           PQ +C   ++L    DLSKSSL  P  K
Sbjct: 383 PQASCTEAVSLTADIDLSKSSLATPRPK 410


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 38  STCTWAKMALWLMRKKDRF*SIRV 109
           S   W+ M+ WL++KKD+    R+
Sbjct: 34  SAIYWSCMSFWLLKKKDQIDKERI 57


>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 228 EGQGSVLSTHDSSRYRC-ICESQPFL*GYREDLFGNIRIYCTRIDQKRSFFRMSHNAIF 55
           E  GS+L+TH++  +   +     F+  +  D  G   +YC+        F ++ N  F
Sbjct: 149 EASGSILTTHENKSFTLKLANELEFI--FFHDTRGKFSVYCSSSKDDAITFSINRNNNF 205


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = -1

Query: 368 PVMPINMLLVSLATCPEPICPQWNCLAPITLRRGRDLSKSSL 243
           PVMPIN   VSL    E +       AP TL    D  KS+L
Sbjct: 384 PVMPINGYSVSLWLNIESLMNDDGNYAPTTLFLISDFLKSTL 425


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 260 LSKSSLRPPAMKARVAF*APMTPPDTGASVN 168
           L+ SS+ PPA  A  +     TP + G S+N
Sbjct: 248 LAFSSIEPPASSASTSPRNTPTPSNNGTSIN 278


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 144 REDLFGNIRIYCTRIDQKRSFFRMSH 67
           R    G+ R YCT  D  +SF R  H
Sbjct: 17  RAHRLGDPRFYCTYPDCPKSFTRKEH 42


>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -3

Query: 405 FNAHVHALSCSHSGDAHQHVIGQFSHL 325
           FN  +  +  +  G  H H  G  SHL
Sbjct: 173 FNTSITEIEVTEHGTGHIHTFGDASHL 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,384
Number of Sequences: 5004
Number of extensions: 40431
Number of successful extensions: 106
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)