Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9a13
(413 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81453-8|CAB03798.1| 299|Caenorhabditis elegans Hypothetical pr... 111 1e-25
AL031630-23|CAA21003.1| 299|Caenorhabditis elegans Hypothetical... 111 1e-25
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 29 1.3
AC024859-26|AAK29977.2| 300|Caenorhabditis elegans Hypothetical... 29 1.8
AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore... 28 3.1
AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore... 28 3.1
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z75547-2|CAA99909.2| 622|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z75547-1|CAA99908.2| 621|Caenorhabditis elegans Hypothetical pr... 27 4.1
AC006610-1|AAK85447.4| 360|Caenorhabditis elegans Hypothetical ... 27 4.1
Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z81097-15|CAB03172.1| 412|Caenorhabditis elegans Hypothetical p... 27 5.4
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p... 27 5.4
U23523-4|AAC46557.1| 83|Caenorhabditis elegans Hypothetical pr... 27 5.4
AF045645-5|AAL06039.2| 140|Caenorhabditis elegans Ground-like (... 27 5.4
AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi dom... 27 5.4
EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c pro... 27 7.1
EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b pro... 27 7.1
AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical ... 27 7.1
AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical ... 27 7.1
AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical ... 27 7.1
>Z81453-8|CAB03798.1| 299|Caenorhabditis elegans Hypothetical
protein B0250.5 protein.
Length = 299
Score = 111 bits (268), Expect = 1e-25
Identities = 59/137 (43%), Positives = 84/137 (61%), Gaps = 1/137 (0%)
Frame = +1
Query: 4 VVSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAP 183
++++L S+ V VY G+ G+ + G+L +DSSTID V ++ A + DAP
Sbjct: 61 IITVLPSSPHVKAVYQGEAGIFKTIQPGTLCMDSSTIDQIVSLEVAQAAALLKAEYIDAP 120
Query: 184 VSGGVMGAQNATLAFMAG-GRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMG 360
+SGGV GAQ ATL FM G G F+R+ +L +MG + G +G+G AK+ NNML+G
Sbjct: 121 ISGGVTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLG 180
Query: 361 ITGMATAECMNMGIKMG 411
I +A AE MN+GI MG
Sbjct: 181 IQMVAVAETMNLGISMG 197
>AL031630-23|CAA21003.1| 299|Caenorhabditis elegans Hypothetical
protein B0250.5 protein.
Length = 299
Score = 111 bits (268), Expect = 1e-25
Identities = 59/137 (43%), Positives = 84/137 (61%), Gaps = 1/137 (0%)
Frame = +1
Query: 4 VVSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAP 183
++++L S+ V VY G+ G+ + G+L +DSSTID V ++ A + DAP
Sbjct: 61 IITVLPSSPHVKAVYQGEAGIFKTIQPGTLCMDSSTIDQIVSLEVAQAAALLKAEYIDAP 120
Query: 184 VSGGVMGAQNATLAFMAG-GRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMG 360
+SGGV GAQ ATL FM G G F+R+ +L +MG + G +G+G AK+ NNML+G
Sbjct: 121 ISGGVTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLG 180
Query: 361 ITGMATAECMNMGIKMG 411
I +A AE MN+GI MG
Sbjct: 181 IQMVAVAETMNLGISMG 197
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 29.1 bits (62), Expect = 1.3
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = -1
Query: 326 CPEPICPQWNCLAPITLRRGRDLSKSSLRPPAMKARVAF*APMTPPDTGASVNPSPFSRA 147
C E ICPQ P + GR + +PPA +R P T + P+P S+
Sbjct: 991 CEECICPQ-TAPTPPHVPTGRPTTVGQAQPPASSSRRVTEVGPPAPRTTEAAPPAPSSQP 1049
Query: 146 IGKICLGT 123
+ + T
Sbjct: 1050 PRQFAVNT 1057
>AC024859-26|AAK29977.2| 300|Caenorhabditis elegans Hypothetical
protein Y71H2AM.2 protein.
Length = 300
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 359 PINMLLVSLATCPEPICPQWNCLAPITLRRGRDLSKSSLRPP 234
P N LL+ A+ CP+ NC ITL RD +++R P
Sbjct: 103 PCNCLLICKASSTRIACPRNNCRRVITLAGQRD-PGTAIRAP 143
>AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform b protein.
Length = 392
Score = 27.9 bits (59), Expect = 3.1
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 190 GGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQ--FHCGQIGSGQVAKLTNNMLMGI 363
GG+ G + AF+ G +E F+ + M Q +HC + G + A T N L
Sbjct: 265 GGIPGTRGLVNAFLKVGTEESFQPEDDSIDGMPTWQVTYHCVRAGDMKSASETLNRLKSF 324
Query: 364 TGMAT 378
AT
Sbjct: 325 PQCAT 329
>AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform a protein.
Length = 787
Score = 27.9 bits (59), Expect = 3.1
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 190 GGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQ--FHCGQIGSGQVAKLTNNMLMGI 363
GG+ G + AF+ G +E F+ + M Q +HC + G + A T N L
Sbjct: 265 GGIPGTRGLVNAFLKVGTEESFQPEDDSIDGMPTWQVTYHCVRAGDMKSASETLNRLKSF 324
Query: 364 TGMAT 378
AT
Sbjct: 325 PQCAT 329
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
C06B8.7 protein.
Length = 3118
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 109 YSNRSEAILFSHEPQRHLCPGTRRARL 29
++ SEA+++ H PQ + PGT A +
Sbjct: 1469 FTRNSEAVMWLHSPQHAVVPGTPIAEI 1495
>Z75547-2|CAA99909.2| 622|Caenorhabditis elegans Hypothetical
protein R11D1.1b protein.
Length = 622
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 315 DLSAVELLSSHHFEERKGPFEVF--FTTSGHEGQGSVLSTHD 196
D+ E +H+F R+GP ++F +G E +L HD
Sbjct: 491 DMMDNEADDNHYFRRRRGPLQLFVLLQRAGEEHLARMLEEHD 532
>Z75547-1|CAA99908.2| 621|Caenorhabditis elegans Hypothetical
protein R11D1.1a protein.
Length = 621
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 315 DLSAVELLSSHHFEERKGPFEVF--FTTSGHEGQGSVLSTHD 196
D+ E +H+F R+GP ++F +G E +L HD
Sbjct: 490 DMMDNEADDNHYFRRRRGPLQLFVLLQRAGEEHLARMLEEHD 531
>AC006610-1|AAK85447.4| 360|Caenorhabditis elegans Hypothetical
protein C30F12.1 protein.
Length = 360
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 257 SKSSLRPPAMKARVAF*APMTPPDTGASVNPSPFSRAI 144
S SS RP +A +P T T + NP P RA+
Sbjct: 191 SSSSHRPIRQSVSIATSSPATSSSTPSKYNPDPSLRAV 228
>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical protein
H05L14.2 protein.
Length = 2162
Score = 27.1 bits (57), Expect = 5.4
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -1
Query: 314 ICPQWNCLAPITLRRGRDLSKSSLRPPAMKARVAF*APMTPP 189
+C Q + P T RR +D S S PA ++ AF P PP
Sbjct: 924 VCGQRRKVTPFTPRRKQD-SSSGDEQPASESTSAFDIPEHPP 964
>Z81097-15|CAB03172.1| 412|Caenorhabditis elegans Hypothetical
protein K07A1.11 protein.
Length = 412
Score = 27.1 bits (57), Expect = 5.4
Identities = 23/96 (23%), Positives = 38/96 (39%)
Frame = -3
Query: 291 SSHHFEERKGPFEVFFTTSGHEGQGSVLSTHDSSRYRCICESQPFL*GYREDLFGNIRIY 112
+ H E + F GHEG+G +S ++ + + + D+ N I
Sbjct: 150 TKHPSEPKDTKFRPQLRLKGHEGEGYGMSWSNTREGHLLTAGDDGMICHW-DINANQTIS 208
Query: 111 CTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGND 4
+ Q + F S NA H H+F+ G G+D
Sbjct: 209 GQIVPQSK-FKGHSSNAEDVSFHALHNFVFGSVGDD 243
>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
protein H05L14.2 protein.
Length = 2162
Score = 27.1 bits (57), Expect = 5.4
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -1
Query: 314 ICPQWNCLAPITLRRGRDLSKSSLRPPAMKARVAF*APMTPP 189
+C Q + P T RR +D S S PA ++ AF P PP
Sbjct: 924 VCGQRRKVTPFTPRRKQD-SSSGDEQPASESTSAFDIPEHPP 964
>U23523-4|AAC46557.1| 83|Caenorhabditis elegans Hypothetical
protein F53A9.2 protein.
Length = 83
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 336 TDQ*HVDGHHRNGYS*VHEHGH 401
TD H GHH + +S +HE GH
Sbjct: 37 TDGGHHHGHHHHHHSFLHELGH 58
>AF045645-5|AAL06039.2| 140|Caenorhabditis elegans Ground-like (grd
related) protein26 protein.
Length = 140
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 216 SVLSTHDSSRYRCICESQPF 157
S L HDS RY +C PF
Sbjct: 96 SALEDHDSHRYVVVCSENPF 115
>AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi
domain-containing protein2 protein.
Length = 975
Score = 27.1 bits (57), Expect = 5.4
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 217 TLAFMAGGRKEDFERSLPLLKVMGAK-QFHCGQIGSGQVAKLTNNMLMGITGMATAEC 387
TL F+ G + ++ P + + G K FH Q+ +++ +T+N+ GITG C
Sbjct: 298 TLQFIEGPYGRN--QNNPSIVIDGMKVAFHMEQLVFQKLSSITSNLANGITGSERERC 353
>EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c
protein.
Length = 765
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 392 FMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 279
F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 625 FVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 661
>EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b
protein.
Length = 818
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 392 FMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 279
F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 678 FVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 714
>AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical
protein Y55D9A.1c protein.
Length = 765
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 392 FMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 279
F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 625 FVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 661
>AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical
protein Y55D9A.1b protein.
Length = 818
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 392 FMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 279
F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 678 FVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 714
>AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical
protein Y55D9A.1a protein.
Length = 816
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 392 FMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 279
F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 676 FVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 712
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,887,510
Number of Sequences: 27780
Number of extensions: 234598
Number of successful extensions: 644
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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