Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9a06
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    28   0.70 
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   3.8  
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    25   5.0  

>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 121 FLVYSIIDLLFYVMLVCWNVNRVLGLM 201
           FL+  ++ LL YV L  + VNRVLGL+
Sbjct: 696 FLLACLLLLLIYVPLNRFRVNRVLGLL 722


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 327 LCIVLLSYFVLFIILC*VNVKL*DNKLVP-ELWKKK 431
           L   +L+YF  FI LC ++ K+ +  LVP  LW K+
Sbjct: 503 LLFAVLTYFSTFIFLCSLS-KILNGPLVPFWLWAKE 537


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 144 SFVLCDVSVLECESSTRADDERVYTCRTLG 233
           +F +     LECE +T +  E +  C++LG
Sbjct: 180 TFAVALAKALECEVTTISSTENLDLCKSLG 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,762,370
Number of Sequences: 5004
Number of extensions: 33637
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)