Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9a06
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903     31   0.30 
05_06_0257 + 26723858-26724049,26724073-26724230,26724886-267250...    29   1.2  
04_04_0977 + 29851086-29851463,29852054-29852551,29853665-298537...    29   1.6  
02_01_0266 - 1758439-1758599,1758682-1758769,1759363-1759564,175...    28   3.7  
02_05_0908 + 32668706-32669140,32669772-32669957,32670316-326704...    27   8.6  

>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
          Length = 1135

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 18/37 (48%), Positives = 26/37 (70%)
 Frame = -3

Query: 346 DSNTIHNILHLSTSIIDSLQLYSVRRRSDARTAVARL 236
           ++N++   L +  + +D  QL S+RR SDARTAVARL
Sbjct: 34  ETNSLQQDLRIVAAAMDD-QLLSIRR-SDARTAVARL 68


>05_06_0257 +
           26723858-26724049,26724073-26724230,26724886-26725024,
           26725130-26725315,26727117-26727310,26728113-26728193,
           26728248-26728338,26728414-26728590
          Length = 405

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 325 CCVLYYCPILFYLLFCVRSM 384
           C ++ YCP+L YL FC  S+
Sbjct: 311 CKLMEYCPLLTYLAFCYSSL 330


>04_04_0977 +
           29851086-29851463,29852054-29852551,29853665-29853754,
           29854369-29854491
          Length = 362

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 325 ILHLSTSIIDSLQLYSVR-RRSDARTAVARLGP 230
           +LHL+ + + SL LYS+  +R     A+A LGP
Sbjct: 273 VLHLNVTALGSLALYSISVKRFHGGKAIASLGP 305


>02_01_0266 -
           1758439-1758599,1758682-1758769,1759363-1759564,
           1759664-1759800,1760169-1760268,1760350-1760522,
           1760797-1760941,1761018-1761139,1761225-1761470,
           1761962-1762182,1762278-1762338,1762409-1762487,
           1762572-1762651,1763221-1763292,1763382-1763449,
           1763550-1763588,1763828-1763903,1763992-1764006
          Length = 694

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 191 STRFTFQHTNIT*NKRSIIEYTKNHLNYRLQD-KSRSADLKYYDRFIK 51
           S  +TF H  +T NKR  I+   ++L  RL++      +LK Y +  K
Sbjct: 167 SCEWTFIHALLTANKRKQIDQVVHYLEERLRELDEEKEELKKYQQLDK 214


>02_05_0908 +
           32668706-32669140,32669772-32669957,32670316-32670414,
           32671010-32671147,32672276-32672533,32675009-32675272,
           32675426-32675571,32675762-32675839,32676746-32676875,
           32677040-32677286,32677374-32677423,32677767-32677869,
           32678332-32678354
          Length = 718

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 319 VKCCVLYYCPILFYLLFCVRSM*NCEIINWYLS 417
           + C V  +   LF+ L  V+    C ++NW+ +
Sbjct: 187 ISCLVAIFIDPLFFFLLSVQKDNKCIVLNWHFA 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,853,612
Number of Sequences: 37544
Number of extensions: 195680
Number of successful extensions: 470
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)