Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9a06
(432 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039053-17|AAC25882.2| 279|Caenorhabditis elegans Serpentine r... 30 0.62
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 29 1.1
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 29 1.1
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 29 1.1
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 29 1.1
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 29 1.1
Z73969-21|CAI46568.2| 272|Caenorhabditis elegans Hypothetical p... 27 7.7
Z70783-12|CAI46596.2| 272|Caenorhabditis elegans Hypothetical p... 27 7.7
AC006832-4|AAF39996.1| 485|Caenorhabditis elegans Hypothetical ... 27 7.7
>AF039053-17|AAC25882.2| 279|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 16 protein.
Length = 279
Score = 30.3 bits (65), Expect = 0.62
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 142 DLLFYVMLVCWNVNRVLGLMTSVFIRAERSARV-APLPYGRHCVYEPNRVV 291
+++FY LV WN+ L T++ I ER V P+ Y + Y P V+
Sbjct: 77 NMIFYFSLVSWNIGAARSL-TALTISVERVMAVYVPITYRNYRPYFPTFVI 126
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 195 ADDERVYTCRTLGPSRATAVRASLRLRTE 281
+DD YTCR S + RA+LR++T+
Sbjct: 5458 SDDADEYTCRATNSSGTRSTRANLRIKTK 5486
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 195 ADDERVYTCRTLGPSRATAVRASLRLRTE 281
+DD YTCR S + RA+LR++T+
Sbjct: 5987 SDDADEYTCRATNSSGTRSTRANLRIKTK 6015
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 195 ADDERVYTCRTLGPSRATAVRASLRLRTE 281
+DD YTCR S + RA+LR++T+
Sbjct: 5668 SDDADEYTCRATNSSGTRSTRANLRIKTK 5696
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 195 ADDERVYTCRTLGPSRATAVRASLRLRTE 281
+DD YTCR S + RA+LR++T+
Sbjct: 5458 SDDADEYTCRATNSSGTRSTRANLRIKTK 5486
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 195 ADDERVYTCRTLGPSRATAVRASLRLRTE 281
+DD YTCR S + RA+LR++T+
Sbjct: 5987 SDDADEYTCRATNSSGTRSTRANLRIKTK 6015
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 195 ADDERVYTCRTLGPSRATAVRASLRLRTE 281
+DD YTCR S + RA+LR++T+
Sbjct: 5668 SDDADEYTCRATNSSGTRSTRANLRIKTK 5696
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 195 ADDERVYTCRTLGPSRATAVRASLRLRTE 281
+DD YTCR S + RA+LR++T+
Sbjct: 4877 SDDADEYTCRATNSSGTRSTRANLRIKTK 4905
>Z73969-21|CAI46568.2| 272|Caenorhabditis elegans Hypothetical
protein ZK856.14 protein.
Length = 272
Score = 26.6 bits (56), Expect = 7.7
Identities = 15/75 (20%), Positives = 34/75 (45%)
Frame = +1
Query: 145 LLFYVMLVCWNVNRVLGLMTSVFIRAERSARVAPLPYGRHCVYEPNRVVGYL*LMSTNVK 324
++F V + W + ++ G + + S+ + +G C +VG + +++K
Sbjct: 19 IMFIVTMNLWRILKIKGKLVELNAFPCASSFIWFHFFGLICPLVDFIIVGTIGTFFSSIK 78
Query: 325 CCVLYYCPILFYLLF 369
C + Y P + LL+
Sbjct: 79 SCFIVYIPTIVSLLY 93
>Z70783-12|CAI46596.2| 272|Caenorhabditis elegans Hypothetical
protein ZK856.14 protein.
Length = 272
Score = 26.6 bits (56), Expect = 7.7
Identities = 15/75 (20%), Positives = 34/75 (45%)
Frame = +1
Query: 145 LLFYVMLVCWNVNRVLGLMTSVFIRAERSARVAPLPYGRHCVYEPNRVVGYL*LMSTNVK 324
++F V + W + ++ G + + S+ + +G C +VG + +++K
Sbjct: 19 IMFIVTMNLWRILKIKGKLVELNAFPCASSFIWFHFFGLICPLVDFIIVGTIGTFFSSIK 78
Query: 325 CCVLYYCPILFYLLF 369
C + Y P + LL+
Sbjct: 79 SCFIVYIPTIVSLLY 93
>AC006832-4|AAF39996.1| 485|Caenorhabditis elegans Hypothetical
protein ZK355.4 protein.
Length = 485
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 68 NILNLHCGFCLVIDNLNDF 124
N+ NLH FCL DNL F
Sbjct: 305 NLENLHPDFCLTFDNLWQF 323
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,906,757
Number of Sequences: 27780
Number of extensions: 195383
Number of successful extensions: 511
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -