Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9a04
         (269 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9U9Q4 Cluster: CG9124-PA, isoform A; n=8; Endopterygot...    69   2e-11
UniRef50_O15372 Cluster: Eukaryotic translation initiation facto...    48   3e-05
UniRef50_Q6P381 Cluster: Eukaryotic translation initiation facto...    48   4e-05
UniRef50_Q4RFC4 Cluster: Chromosome 8 SCAF15119, whole genome sh...    47   9e-05
UniRef50_Q9C5Z2 Cluster: Eukaryotic translation initiation facto...    42   0.003
UniRef50_Q54UD0 Cluster: Putative uncharacterized protein; n=1; ...    32   2.2  
UniRef50_Q5DFV0 Cluster: SJCHGC06090 protein; n=1; Schistosoma j...    32   2.9  
UniRef50_A4S6W8 Cluster: Predicted protein; n=1; Ostreococcus lu...    31   6.6  

>UniRef50_Q9U9Q4 Cluster: CG9124-PA, isoform A; n=8;
           Endopterygota|Rep: CG9124-PA, isoform A - Drosophila
           melanogaster (Fruit fly)
          Length = 338

 Score = 68.9 bits (161), Expect = 2e-11
 Identities = 40/87 (45%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
 Frame = +1

Query: 13  MASRAGSXX-RAPEXEATIXYXQCXGLAVMXIXXHCHEESCXXXXXXXXXXXXXXXENRL 189
           MA+RA     R  + + TI Y QC GLAVM +  HCHEES                +  L
Sbjct: 1   MANRANRHAARTEDSDNTINYVQCDGLAVMKMVKHCHEES-SNMDLAQGALLGLVVDKCL 59

Query: 190 EITXCFPFPKH-DDXMDXEEYQLDMMR 267
           EIT CFPFPK  D+ MD E YQL +MR
Sbjct: 60  EITNCFPFPKSGDETMDEEMYQLTVMR 86


>UniRef50_O15372 Cluster: Eukaryotic translation initiation factor 3
           subunit 3; n=41; Euteleostomi|Rep: Eukaryotic
           translation initiation factor 3 subunit 3 - Homo sapiens
           (Human)
          Length = 352

 Score = 48.4 bits (110), Expect = 3e-05
 Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = +1

Query: 55  EATIXYXQCXGLAVMXIXXHCHEESCXXXXXXXXXXXXXXXENRLEITXCFPFPKH-DDX 231
           ++ +   Q  GL V+ I  H  EE                 E+RLEIT CFPFP+H +D 
Sbjct: 33  DSAVKQVQIDGLVVLKIIKHYQEEG-QGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDD 91

Query: 232 MDXEE--YQLDMMR 267
            D +E  YQ++MMR
Sbjct: 92  ADFDEVQYQMEMMR 105


>UniRef50_Q6P381 Cluster: Eukaryotic translation initiation factor
           3, subunit 3 gamma, 40kDa; n=8; Eumetazoa|Rep:
           Eukaryotic translation initiation factor 3, subunit 3
           gamma, 40kDa - Xenopus tropicalis (Western clawed frog)
           (Silurana tropicalis)
          Length = 335

 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = +1

Query: 55  EATIXYXQCXGLAVMXIXXHCHEESCXXXXXXXXXXXXXXXENRLEITXCFPFPKH-DDX 231
           E  +   Q  G+ V+ I  H  EE                 ++RLEIT CFPFP+H +D 
Sbjct: 16  ETAVKQVQIDGMVVLKIIKHYQEEG-HGSEVVQGVLLGLVVDDRLEITNCFPFPQHTEDD 74

Query: 232 MDXEE--YQLDMMR 267
           +D +E  YQ++MMR
Sbjct: 75  VDFDEVQYQMEMMR 88


>UniRef50_Q4RFC4 Cluster: Chromosome 8 SCAF15119, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 8 SCAF15119, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 315

 Score = 46.8 bits (106), Expect = 9e-05
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = +1

Query: 55  EATIXYXQCXGLAVMXIXXHCHEESCXXXXXXXXXXXXXXXENRLEITXCFPFPKH-DDX 231
           ++ +   Q  GL V+ I  H  EE                 ++RLEIT CFPFP+H +D 
Sbjct: 23  DSPVKQIQIEGLVVLKIIKHYQEEG-QGSEVVQGVLLGLVVDDRLEITNCFPFPQHTEDD 81

Query: 232 MDXEE--YQLDMMR 267
            D +E  YQ++MMR
Sbjct: 82  ADFDEVQYQMEMMR 95


>UniRef50_Q9C5Z2 Cluster: Eukaryotic translation initiation factor 3
           subunit 3; n=6; Magnoliophyta|Rep: Eukaryotic
           translation initiation factor 3 subunit 3 - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 337

 Score = 41.9 bits (94), Expect = 0.003
 Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +1

Query: 76  QCXGLAVMXIXXHCHEESCXXXXXXXXXXXXXXXENRLEITXCFPFPKHDDXMDXE---- 243
           Q  GLAV+ I  HC E S                 + LE+T CFPFP  DD  + E    
Sbjct: 26  QIEGLAVLKIIKHCKEFS---PTLVTGQLLGLDVGSVLEVTNCFPFPVRDDDEEIEADGA 82

Query: 244 EYQLDMMR 267
            YQL+MMR
Sbjct: 83  NYQLEMMR 90


>UniRef50_Q54UD0 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 319

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
 Frame = +1

Query: 187 LEITXCFPFPKHDDXMDXEE----YQLDMMR 267
           LE++ CFPFP  D   +  E    YQL+MMR
Sbjct: 54  LEVSNCFPFPPRDQEDENSESIADYQLEMMR 84


>UniRef50_Q5DFV0 Cluster: SJCHGC06090 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC06090 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 348

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = +1

Query: 76  QCXGLAVMXIXXHCHEESCXXXXXXXXXXXXXXXENRLEITXCFPFPKHDD 228
           Q  G   + +  H  EES                 +RLEIT CFP PK  D
Sbjct: 15  QVEGKVFLKMIKHYEEESVSSQNFVNGVLLGLAQGSRLEITNCFPLPKTQD 65


>UniRef50_A4S6W8 Cluster: Predicted protein; n=1; Ostreococcus
           lucimarinus CCE9901|Rep: Predicted protein -
           Ostreococcus lucimarinus CCE9901
          Length = 345

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 11/95 (11%)
 Frame = +1

Query: 16  ASRAGSXXRAPEXEATIXYXQCXGLAVMXIXXHCHEESCXXXXXXXXXXXXXXXENRLEI 195
           A+ +    +  E +A +   +  G A + I  HC + +                   L++
Sbjct: 7   AAASDGAKKPQEPKAPVKAVELDGGAALKIMKHCADAAPGSATGQLLGLDIGAS---LDV 63

Query: 196 TXCFPFPK--HDDXMDXE---------EYQLDMMR 267
           T CFPFPK   DD  D +          YQLDMMR
Sbjct: 64  TACFPFPKVTADDQYDPDGSFAAEEGAAYQLDMMR 98


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,202,479
Number of Sequences: 1657284
Number of extensions: 2083766
Number of successful extensions: 2870
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2868
length of database: 575,637,011
effective HSP length: 67
effective length of database: 464,598,983
effective search space used: 10221177626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)