Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9a04
         (269 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124...    40   2e-04
04_01_0246 + 3225743-3226473,3226493-3226624,3227580-3227670,322...    26   4.7  
02_03_0085 + 15063444-15063889,15064324-15065311                       25   6.3  
04_01_0021 + 311914-312399,314218-314310,314391-314672,314754-31...    25   8.3  

>04_03_0650 -
           18411588-18411645,18412020-18412172,18412340-18412407,
           18412499-18412600,18412695-18412766,18412843-18412891,
           18412971-18413104,18413488-18413554,18414471-18414574,
           18414677-18414793,18415538-18415647,18415763-18415772
          Length = 347

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = +1

Query: 49  EXEATIXYXQCXGLAVMXIXXHCHEESCXXXXXXXXXXXXXXXENRLEITXCFPFPKHDD 228
           E  + +   Q  GLAV+ I  HC E +                 + LE+T CFPFP  +D
Sbjct: 27  EAPSPLRVVQMEGLAVLKIIKHCEEFA---PALVTGQLLGLDVGSVLEVTNCFPFPMRED 83

Query: 229 ----XMDXEEYQLDMMR 267
                 D   YQL+MMR
Sbjct: 84  DEEADADGANYQLEMMR 100


>04_01_0246 +
           3225743-3226473,3226493-3226624,3227580-3227670,
           3228617-3229074,3229342-3229864
          Length = 644

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -3

Query: 261 HVQLVFLXIHGVVMLWKWEA 202
           ++Q++   IH ++  WKW +
Sbjct: 309 YIQMILCEIHSILSWWKWRS 328


>02_03_0085 + 15063444-15063889,15064324-15065311
          Length = 477

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
 Frame = -2

Query: 268 SSSCPTGIPXHPWXRHALEMGSSX*SPDGSQRPNQGELXEPXPXXC-MILHDSVXLXSSL 92
           SS  PT  P H W R     G     P     P+      P    C +I+  +V L  +L
Sbjct: 32  SSRLPTTTPLHHWPRRRRSRGLPPPPP-----PSPHSTAGPAGEFCKIIIVPTVAL--AL 84

Query: 91  PVXRTXHXGXSLHXQ 47
           P  R  H G ++  Q
Sbjct: 85  PSHRIAHHGTAIEQQ 99


>04_01_0021 +
           311914-312399,314218-314310,314391-314672,314754-314826,
           315273-315405,315476-315629,315763-315843,316174-316296,
           316629-316787,316862-316996,317159-317254,317416-317910,
           318651-318722,319496-319537
          Length = 807

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 262 SCPTGIPXHPWXRHALEMG 206
           +CPTGIP   W   + E+G
Sbjct: 294 ACPTGIPLPDWVFKSKEIG 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,240,791
Number of Sequences: 37544
Number of extensions: 62741
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)