Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9a04
(269 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U54559-1|AAD03465.1| 352|Homo sapiens translation initiation fa... 48 4e-06
CR456906-1|CAG33187.1| 352|Homo sapiens EIF3S3 protein. 48 4e-06
BT019594-1|AAV38401.1| 352|Homo sapiens eukaryotic translation ... 48 4e-06
BC000386-1|AAH00386.1| 352|Homo sapiens eukaryotic translation ... 48 4e-06
AK222620-1|BAD96340.1| 352|Homo sapiens eukaryotic translation ... 48 4e-06
AK222520-1|BAD96240.1| 352|Homo sapiens eukaryotic translation ... 48 4e-06
AF092576-1|AAC84044.1| 352|Homo sapiens translation initiation ... 47 1e-05
BC090880-1|AAH90880.1| 349|Homo sapiens EIF3H protein protein. 43 2e-04
>U54559-1|AAD03465.1| 352|Homo sapiens translation initiation
factor eIF3 p40 subunit protein.
Length = 352
Score = 48.4 bits (110), Expect = 4e-06
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +1
Query: 55 EATIXYXQCXGLAVMXIXXHCHEESCXXXXXXXXXXXXXXXENRLEITXCFPFPKH-DDX 231
++ + Q GL V+ I H EE E+RLEIT CFPFP+H +D
Sbjct: 33 DSAVKQVQIDGLVVLKIIKHYQEEG-QGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDD 91
Query: 232 MDXEE--YQLDMMR 267
D +E YQ++MMR
Sbjct: 92 ADFDEVQYQMEMMR 105
>CR456906-1|CAG33187.1| 352|Homo sapiens EIF3S3 protein.
Length = 352
Score = 48.4 bits (110), Expect = 4e-06
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +1
Query: 55 EATIXYXQCXGLAVMXIXXHCHEESCXXXXXXXXXXXXXXXENRLEITXCFPFPKH-DDX 231
++ + Q GL V+ I H EE E+RLEIT CFPFP+H +D
Sbjct: 33 DSAVKQVQIDGLVVLKIIKHYQEEG-QGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDD 91
Query: 232 MDXEE--YQLDMMR 267
D +E YQ++MMR
Sbjct: 92 ADFDEVQYQMEMMR 105
>BT019594-1|AAV38401.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa protein.
Length = 352
Score = 48.4 bits (110), Expect = 4e-06
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +1
Query: 55 EATIXYXQCXGLAVMXIXXHCHEESCXXXXXXXXXXXXXXXENRLEITXCFPFPKH-DDX 231
++ + Q GL V+ I H EE E+RLEIT CFPFP+H +D
Sbjct: 33 DSAVKQVQIDGLVVLKIIKHYQEEG-QGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDD 91
Query: 232 MDXEE--YQLDMMR 267
D +E YQ++MMR
Sbjct: 92 ADFDEVQYQMEMMR 105
>BC000386-1|AAH00386.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa protein.
Length = 352
Score = 48.4 bits (110), Expect = 4e-06
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +1
Query: 55 EATIXYXQCXGLAVMXIXXHCHEESCXXXXXXXXXXXXXXXENRLEITXCFPFPKH-DDX 231
++ + Q GL V+ I H EE E+RLEIT CFPFP+H +D
Sbjct: 33 DSAVKQVQIDGLVVLKIIKHYQEEG-QGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDD 91
Query: 232 MDXEE--YQLDMMR 267
D +E YQ++MMR
Sbjct: 92 ADFDEVQYQMEMMR 105
>AK222620-1|BAD96340.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa variant
protein.
Length = 352
Score = 48.4 bits (110), Expect = 4e-06
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +1
Query: 55 EATIXYXQCXGLAVMXIXXHCHEESCXXXXXXXXXXXXXXXENRLEITXCFPFPKH-DDX 231
++ + Q GL V+ I H EE E+RLEIT CFPFP+H +D
Sbjct: 33 DSAVKQVQIDGLVVLKIIKHYQEEG-QGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDD 91
Query: 232 MDXEE--YQLDMMR 267
D +E YQ++MMR
Sbjct: 92 ADFDEVQYQMEMMR 105
>AK222520-1|BAD96240.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa variant
protein.
Length = 352
Score = 48.4 bits (110), Expect = 4e-06
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +1
Query: 55 EATIXYXQCXGLAVMXIXXHCHEESCXXXXXXXXXXXXXXXENRLEITXCFPFPKH-DDX 231
++ + Q GL V+ I H EE E+RLEIT CFPFP+H +D
Sbjct: 33 DSAVKQVQIDGLVVLKIIKHYQEEG-QGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDD 91
Query: 232 MDXEE--YQLDMMR 267
D +E YQ++MMR
Sbjct: 92 ADFDEVQYQMEMMR 105
>AF092576-1|AAC84044.1| 352|Homo sapiens translation initiation
factor eIF3 p40 subunit protein.
Length = 352
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +1
Query: 55 EATIXYXQCXGLAVMXIXXHCHEESCXXXXXXXXXXXXXXXENRLEITXCFPFPKH-DDX 231
++ + Q GL V+ I H EE ++RLEIT CFPFP+H +D
Sbjct: 33 DSAVKQVQIDGLVVLKIIKHYQEEG-QGTEVVQGVLLGLVVKDRLEITNCFPFPQHTEDD 91
Query: 232 MDXEE--YQLDMMR 267
D +E YQ++MMR
Sbjct: 92 ADFDEVQYQMEMMR 105
>BC090880-1|AAH90880.1| 349|Homo sapiens EIF3H protein protein.
Length = 349
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/33 (60%), Positives = 26/33 (78%), Gaps = 3/33 (9%)
Frame = +1
Query: 178 ENRLEITXCFPFPKH-DDXMDXEE--YQLDMMR 267
E+RLEIT CFPFP+H +D D +E YQ++MMR
Sbjct: 70 EDRLEITNCFPFPQHTEDDADFDEVQYQMEMMR 102
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,466,240
Number of Sequences: 237096
Number of extensions: 336995
Number of successful extensions: 416
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 76,859,062
effective HSP length: 67
effective length of database: 60,973,630
effective search space used: 1341419860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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