Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9a04
         (269 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic in...    27   1.4  
Z70035-5|CAA93865.2|  429|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical p...    25   9.7  
AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical ...    25   9.7  

>AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.H protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 178 ENRLEITXCFPFPKHDDXMDXE 243
           ++RLEIT CFP  +++  MD +
Sbjct: 57  DSRLEITNCFPTVRNEPVMDDD 78


>Z70035-5|CAA93865.2|  429|Caenorhabditis elegans Hypothetical
           protein R09D1.5 protein.
          Length = 429

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 237 IHGVVMLWKWEAVGNLQTVLND 172
           IHGV + WKW  +GN +T  +D
Sbjct: 172 IHGVDIYWKW--LGNSETEHHD 191


>Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical
           protein M01G12.12 protein.
          Length = 1579

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 211 FPKHDDXMDXEEYQLDMM 264
           FP+ DD +D  EY ++MM
Sbjct: 12  FPEFDDSIDRIEYGIEMM 29


>AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical
           protein M01G12.12 protein.
          Length = 1579

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 211 FPKHDDXMDXEEYQLDMM 264
           FP+ DD +D  EY ++MM
Sbjct: 12  FPEFDDSIDRIEYGIEMM 29


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,215,525
Number of Sequences: 27780
Number of extensions: 49476
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)