Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9a03
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    30   0.41 
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po...    28   1.7  
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ...    27   2.2  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    27   3.9  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    27   3.9  
SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.1  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    26   6.7  

>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 679 CRNFVRNTCNRGASCRYLHKI 741
           C  F R  C+ G+ C YLH++
Sbjct: 117 CLYFARGMCSEGSKCEYLHRL 137


>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 661 DVEETMCRNFVRNTCNRGASCRYLH 735
           D  E  CR    + C RG  C ++H
Sbjct: 143 DFREACCRQHETSECQRGGLCNFMH 167


>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 170

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 676 MCRNFVRNTCNRGASCRYLHK 738
           +C++++R  C +G  C +LH+
Sbjct: 53  VCKHWLRGLCKKGEQCDFLHE 73


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 337 LYSGNLSGLRLSFAFISFTPKRSLKHLEFLSQNNSH 230
           L+SGN SG  +   F+S  P +SL   E LS+ ++H
Sbjct: 40  LFSGNESGSLMQKCFVSKIPNKSLLPTE-LSKISTH 74


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 658 NDVEETMCRNFVRN-TCNRGASCRYLHK 738
           N      CR +  N  C +GA+CR++H+
Sbjct: 202 NSPSAVYCRYYNANGICGKGAACRFVHE 229



 Score = 25.4 bits (53), Expect = 8.9
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +1

Query: 670 ETMCRNFVRNTCNRGASCRYLHKI 741
           +T+C  F+   CN+   C   H++
Sbjct: 233 KTICPKFLNGRCNKAEDCNLSHEL 256


>SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 103

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 320 VWPASELRIYFFYPKKVTQTFRIPFAK*FPLQA 222
           +WP  ELR +  +PK +  + R    K  P QA
Sbjct: 13  LWPKDELRPWLSFPKTLDTSIRARLQKMPPQQA 45


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 676 MCRNFVRNTCNRGASCRYLHKI 741
           +C+ F++N C  G +C+  H +
Sbjct: 3   VCKYFLQNRCRYGTNCKNQHTV 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,596
Number of Sequences: 5004
Number of extensions: 58274
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)