Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9a03
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1309 + 29223197-29223240,29223358-29223592,29223695-292237... 40 0.002
05_07_0125 + 27861368-27862282 36 0.027
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817 35 0.061
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283... 34 0.11
03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002... 33 0.25
06_03_1121 + 27767707-27768065,27768612-27769034,27770013-277701... 31 1.0
02_05_0300 + 27681204-27681656,27681745-27681840,27681933-276820... 30 1.7
04_04_1500 + 34010819-34011016,34013267-34013308,34014195-340142... 30 2.3
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 30 2.3
07_01_1143 - 10711023-10711884,10713603-10713826,10714253-107145... 29 3.1
06_01_0493 - 3536207-3537056,3537603-3537826,3538234-3538503,353... 29 3.1
02_05_1041 - 33713561-33714564,33714844-33714904,33715640-337159... 29 4.0
01_06_0572 - 30337572-30338107,30338209-30338422,30338505-303388... 28 7.1
01_01_0650 - 4948852-4950012 28 9.3
>06_03_1309 +
29223197-29223240,29223358-29223592,29223695-29223783,
29223870-29223968,29224065-29224158,29224297-29224514,
29224861-29224967,29225298-29225472,29225596-29225743,
29226548-29226596,29228016-29228162,29229990-29229996,
29230417-29230482,29230773-29231991,29232073-29233149,
29233226-29233355,29233519-29233617,29233817-29233878,
29234429-29234533
Length = 1389
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +1
Query: 670 ETMCRNFVRNTCNRGASCRYLHKIIHSQ 753
+ +CRNF R +C GA CRYLH H Q
Sbjct: 5 QEICRNFQRGSCKYGAQCRYLHASPHQQ 32
>05_07_0125 + 27861368-27862282
Length = 304
Score = 36.3 bits (80), Expect = 0.027
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 661 DVEETMCRNFVRNTCNRGASCRYLH 735
D E CR F N+CNRG C ++H
Sbjct: 148 DFREATCRQFEENSCNRGGYCNFMH 172
>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
Length = 958
Score = 35.1 bits (77), Expect = 0.061
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +1
Query: 679 CRNFVRNTCNRGASCRYLH 735
C +FV+ C+RGA+CRY+H
Sbjct: 320 CHDFVKGRCSRGANCRYVH 338
Score = 31.5 bits (68), Expect = 0.76
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 679 CRNFVRNTCNRGASCRYLHK 738
CR+FV C RG++CR+ H+
Sbjct: 235 CRDFVAGRCRRGSNCRFPHE 254
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 679 CRNFVRNTCNRGASCRYLHK 738
C+ F C RG +C YLH+
Sbjct: 379 CKFFANGGCRRGQNCPYLHE 398
>04_03_1028 -
21827961-21827972,21828018-21828112,21828286-21828361,
21828921-21829037,21829532-21829621,21830011-21830056,
21831407-21831502,21831599-21832008
Length = 313
Score = 34.3 bits (75), Expect = 0.11
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 661 DVEETMCRNFVRNTCNRGASCRYLHKIIHSQ 753
D + T C + +RN C RG +CRY H H Q
Sbjct: 138 DSKVTACADSLRNNCFRGRTCRYYHPPPHIQ 168
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +1
Query: 658 NDVEETMCRNFVRNTCNRGASCRYLHKIIHSQ 753
N+ +CR++++N CNR SCR+ H ++++
Sbjct: 280 NNYGVEVCRDYLKNMCNR-ESCRFAHPDLNNE 310
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = +1
Query: 634 PTENDGKP---NDVEETMCRNFVRNTCNRG-ASCRYLH 735
P DGK ND+ +CR+F+R+ C R C+Y H
Sbjct: 91 PRYPDGKRRRHNDLNVEVCRDFLRDRCARADIECKYAH 128
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 676 MCRNFVRNTCNRGAS-CRYLHKIIHSQLK 759
+CR+F R C+R A+ CR+LH HS L+
Sbjct: 185 VCRDFTRGRCSRSANECRFLH---HSPLE 210
>03_06_0523 +
34499533-34499705,34499808-34499917,34500037-34500224,
34500984-34501451
Length = 312
Score = 33.1 bits (72), Expect = 0.25
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 676 MCRNFVRNTCNRGASCRYLH 735
+C F + CNRGASCRY H
Sbjct: 135 VCYAFQKGECNRGASCRYSH 154
>06_03_1121 +
27767707-27768065,27768612-27769034,27770013-27770175,
27770271-27770381,27770895-27770963,27771117-27771203,
27771967-27772752
Length = 665
Score = 31.1 bits (67), Expect = 1.0
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +1
Query: 670 ETMCRNFVRNTCNRGASCRYLHK 738
+T+CR+++R C +G +C +LH+
Sbjct: 61 QTVCRHWLRGLCMKGEACGFLHQ 83
>02_05_0300 +
27681204-27681656,27681745-27681840,27681933-27682022,
27682126-27682227,27682310-27682456,27683608-27683748,
27683749-27683808,27685133-27685230,27685308-27685410,
27685954-27686037
Length = 457
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 634 PTENDGKP-NDVEETMCRNFVRNTCNRGASCRYLH 735
P DG P + V + CR F+ C+ G CRY H
Sbjct: 98 PGGADGGPRHKVPDRPCRYFLAGDCSYGEKCRYPH 132
>04_04_1500 +
34010819-34011016,34013267-34013308,34014195-34014204,
34014526-34014586,34014621-34014678,34015266-34015412,
34015643-34016205,34018942-34019728
Length = 621
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 649 GKPNDVEETMCRNFVRNTCNRGASCRYLH 735
G ++ + +C NFV+ TC G C + H
Sbjct: 583 GGRSNYKTKLCENFVKGTCTFGDRCHFAH 611
>01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,
8561377-8561642,8561967-8562111,8562411-8562530,
8562611-8562930,8564161-8564341,8564434-8564580,
8565186-8565497,8566303-8566450,8566592-8566765,
8567385-8567446,8567499-8567571,8567628-8567683,
8568370-8568645,8569541-8569588,8569870-8569991,
8570258-8570413,8571037-8571079,8572624-8572701,
8572972-8573070,8573168-8573209,8573302-8573304
Length = 1264
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 664 VEETMCRNFVRNTCNRGASCRYLH 735
+E MC F+ +CNRG +C + H
Sbjct: 981 LENEMCVFFLNGSCNRGDTCHFSH 1004
>07_01_1143 -
10711023-10711884,10713603-10713826,10714253-10714522,
10715071-10715175
Length = 486
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 676 MCRNFVRNTCNRGASCRYLHKI 741
+C +VR C RGA C Y H++
Sbjct: 162 VCSFYVRGECTRGAECPYRHEM 183
>06_01_0493 -
3536207-3537056,3537603-3537826,3538234-3538503,
3539042-3539146
Length = 482
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 676 MCRNFVRNTCNRGASCRYLHKI 741
+C +VR C RGA C Y H++
Sbjct: 162 VCSFYVRGECTRGAECPYRHEM 183
>02_05_1041 -
33713561-33714564,33714844-33714904,33715640-33715951,
33716780-33716917
Length = 504
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 655 PNDVEETMCRNFVRNTCNRGASCRYLHKII 744
P +MC+ F++ C G++CR H I+
Sbjct: 144 PTSENMSMCKFFLQQRCRFGSNCRLSHGIV 173
>01_06_0572 -
30337572-30338107,30338209-30338422,30338505-30338862,
30338948-30339048,30339185-30339749,30340553-30340664,
30341196-30341372,30341589-30341686,30341859-30341953,
30342078-30342158
Length = 778
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 414 GGESLAPISCSNRIPGSRSYGK 479
GG+S +P SC+ +I G+R Y K
Sbjct: 177 GGDSFSPSSCNRKIIGARYYVK 198
>01_01_0650 - 4948852-4950012
Length = 386
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 673 TMCRNFVRNTCNRGASCRYLHKIIHSQL 756
T C +F + C RG +C Y H + L
Sbjct: 120 TACPDFRKGGCKRGDACEYAHGVFECWL 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,219,716
Number of Sequences: 37544
Number of extensions: 317230
Number of successful extensions: 716
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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