Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8p23
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    28   0.85 
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.6  
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po...    26   3.4  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   4.5  
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    25   6.0  
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N...    25   6.0  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    25   6.0  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   7.9  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   7.9  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 28.3 bits (60), Expect = 0.85
 Identities = 22/90 (24%), Positives = 39/90 (43%)
 Frame = +1

Query: 229 LISYNFLYKVSPLYTLVAYVAVGLFCYSILFVVFISVSCLVLREPIYGGCIASSLVSALM 408
           L+S   LY      +LV    +  F   +LF+ F+  SC+V  E  +      + +  L+
Sbjct: 361 LVSERMLYLSLMYKSLVDLKTIDSFSLKLLFLKFMICSCMVKGESNF---FLDNRI-FLL 416

Query: 409 NFIFNTQGLTTSLSFSLTAVYLYSTMLRWS 498
             I N  G+  ++   L   ++ +   RWS
Sbjct: 417 ERIMNRYGIPMTIDTFLLMQFILAKSNRWS 446


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +1

Query: 208 CALLPALLISYNFLYKVSPLYTLVAYVAVGLFCYSILFVVFISVSCLV 351
           C LLP  +  + +      ++ +V  +A   F +S+L V F+S + ++
Sbjct: 423 CFLLPISMFWFAWTCYPHHIHWIVPIIASAFFGFSLLIVFFVSYNYII 470


>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 22/101 (21%), Positives = 41/101 (40%)
 Frame = +1

Query: 226 LLISYNFLYKVSPLYTLVAYVAVGLFCYSILFVVFISVSCLVLREPIYGGCIASSLVSAL 405
           L +S +F+      Y L A++A+  F  +   V     S ++   P      +SS     
Sbjct: 67  LSLSVSFITHGDNAYLLPAWIAISCFQTAAYIVQDWITSPIIRTLPFRSSSSSSSNYRHN 126

Query: 406 MNFIFNTQGLTTSLSFSLTAVYLYSTMLRWSLTKFPKTYTI 528
           ++F+  T      +     A +    ML W L K+P ++ +
Sbjct: 127 LDFLEITVFAVVPVGI---ASFFTMVMLIWQLYKYPDSFLV 164


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 328 IPQTVCCSRINQQLRKLLVYKVATLCTKNCMRL 230
           IP+  C   I  +L  +L Y +  LC   C  L
Sbjct: 806 IPKAFCAVEIVDRLAAMLNYNLQALCGPKCSNL 838


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 188 QATGYGVVLYCPHY*SH 238
           +ATGYGVV Y  H   H
Sbjct: 194 EATGYGVVYYVKHMIEH 210


>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
           Nic1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 258 VATLYTSSLRSCWFILLQHTVCGIHFCIMSGTQRAYLWRMYS 383
           +ATL      S W ILL   V  +  C++  T  A ++  YS
Sbjct: 227 IATLQALKGTSIWAILLFPIVFLVGMCLVDTTDGALMYYAYS 268


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +1

Query: 334 SVSCLVLREPIYGGCIASSLVSALMNFIFNTQGLTTSLSFSLTAVYLYSTML 489
           S+S   ++   +GG I + L   + + +  +   +  +SFS+  V +Y TML
Sbjct: 17  SLSASQIQMLAFGGIIGTGLFLGIGSSLAESGPASLLISFSVLGVSVYCTML 68


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 546 YNHGFSYSVCLW 511
           Y HGFS S C W
Sbjct: 293 YKHGFSVSCCCW 304


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 352 VPDMIQK*IPQTVCCSRINQQLRKLLVYKVATLCTKNCMRLIMRAVKHN 206
           + ++ +K IP+     + NQ  R     K + LC +   R   R +K+N
Sbjct: 627 IKEIARKEIPRVYKIIQQNQYNRSTNARKTSQLCGREARRWQFRTIKNN 675


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,402,179
Number of Sequences: 5004
Number of extensions: 48658
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)