Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8p23
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0663 - 5059881-5060119,5060682-5060898,5061008-5061838,506...    29   2.0  
01_01_1139 - 9024609-9024708,9024832-9024910,9025083-9025252,902...    29   2.7  
06_02_0349 + 15032131-15033117                                         28   4.6  
04_01_0505 + 6599181-6599249,6599537-6599632,6599931-6599962,660...    28   6.1  
02_02_0533 - 11271859-11272039,11273302-11273336                       27   8.1  

>01_01_0663 -
           5059881-5060119,5060682-5060898,5061008-5061838,
           5063560-5064120
          Length = 615

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 280 LLVYKVATLCTKNCMRLIMRAV 215
           LL+  VA LC K+CM+L+ R +
Sbjct: 203 LLILSVANLCNKSCMKLLERCL 224


>01_01_1139 -
           9024609-9024708,9024832-9024910,9025083-9025252,
           9025339-9025451,9025518-9025586,9025867-9025944,
           9026022-9026084,9026590-9026670,9027166-9027222,
           9027352-9027705
          Length = 387

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = +1

Query: 244 FLYKVSPLYTLVAYVAVGLFCYSILFVVFISVSCLVLREPIYGGCIASSLVSALMNFIFN 423
           FLYK+  +  +V Y AV LF Y +  V +  +  L LR  +  G   S++    MN +  
Sbjct: 186 FLYKLLKVIRIVPYSAVQLFSYEVYKVTY-PLDVLRLRLAVQSG--HSTMSQVAMNML-R 241

Query: 424 TQGLTT 441
            +GL +
Sbjct: 242 DEGLAS 247


>06_02_0349 + 15032131-15033117
          Length = 328

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 26/88 (29%), Positives = 37/88 (42%)
 Frame = +1

Query: 34  LFKICSQKRMQSNSKVLHFYNSFKRYTSLCMSVDYTISRNLRDGGIGTRPISSNGLWCCA 213
           LF  C ++R+    +        +R  S C S  Y + RNL  G  G   +  N + CCA
Sbjct: 124 LFFDCDEERVIVEPRPAVCDRYPERCDSTCDSAGY-LCRNL-PGCRGA--LEENNMSCCA 179

Query: 214 LLPALLISYNFLYKVSPLYTLVAYVAVG 297
             P    S   + +    YT V + AVG
Sbjct: 180 YRPRAAESLRLMLRHCESYTSVYWRAVG 207


>04_01_0505 +
           6599181-6599249,6599537-6599632,6599931-6599962,
           6601191-6601428,6601852-6601905,6601923-6602130,
           6602353-6602590,6602788-6602962,6603074-6603442
          Length = 492

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 455 EKDNDVVKPCVLNIKFIRADTR 390
           E+DND V P  LN+  +RA TR
Sbjct: 106 EEDNDYVDPPTLNLTVLRAATR 127


>02_02_0533 - 11271859-11272039,11273302-11273336
          Length = 71

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 330 HFCIMSGTQRAYLWRMYSI*SCIC 401
           HFCI  G     +WR+  I SC C
Sbjct: 18  HFCIGRGGIGMNIWRLLKIISCSC 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,584,889
Number of Sequences: 37544
Number of extensions: 275781
Number of successful extensions: 664
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)