Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8p23
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    25   0.41 
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    25   0.41 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   5.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   6.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.7  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +1

Query: 253 KVSPLYTLVAYVAVGLFCYSILFVVFISVSCLVLREPIYGGCIASSLVSALMNFIFNTQG 432
           +++ L   +   AVG+F    + + +I +   +LR    GGC   S  S+     F + G
Sbjct: 73  RLNKLAVFIVAGAVGVFSSPTILISYIYILMAILRMSADGGCRNFSTCSSHPTAAFISYG 132


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +1

Query: 253 KVSPLYTLVAYVAVGLFCYSILFVVFISVSCLVLREPIYGGCIASSLVSALMNFIFNTQG 432
           +++ L   +   AVG+F    + + +I +   +LR    GGC   S  S+     F + G
Sbjct: 72  RLNKLAVFIVAGAVGVFSVLTILISYIYILMAILRMSADGGCRNFSTCSSHPTAAFISYG 131


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 6/29 (20%), Positives = 18/29 (62%)
 Frame = +1

Query: 247 LYKVSPLYTLVAYVAVGLFCYSILFVVFI 333
           ++K++P++  + Y    L C++ ++ + I
Sbjct: 90  VFKIAPIFKGIGYATCVLSCWTNIYYIII 118


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 6/29 (20%), Positives = 18/29 (62%)
 Frame = +1

Query: 247 LYKVSPLYTLVAYVAVGLFCYSILFVVFI 333
           ++K++P++  + Y    L C++ ++ + I
Sbjct: 143 VFKIAPIFKGIGYATCVLSCWTNIYYIII 171


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 135 LYNFKKSKRWRYRNEAY 185
           +Y+F+ S+ WR  N  +
Sbjct: 210 VYDFRNSRSWRITNNLF 226


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 301 INQQLRKLLVYKVATLCTKN 242
           +NQ ++K L  ++ T C KN
Sbjct: 322 LNQDVQKKLREEINTFCPKN 341


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 376 CIASSLVSALMNFIFNTQGLTTSLSFSL 459
           C+  S +S L+ ++ +  G   SLS S+
Sbjct: 247 CVGISFLSVLVFYLPSDSGEKVSLSISI 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,519
Number of Sequences: 438
Number of extensions: 3411
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)