Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8p17
(616 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF063608-1|ABN79919.1| 139|Homo sapiens heparan sulfate 3-O-sul... 31 2.4
EF063607-1|ABN79918.1| 139|Homo sapiens heparan sulfate 3-O-sul... 31 2.4
EF063606-1|ABN79917.1| 139|Homo sapiens heparan sulfate 3-O-sul... 31 2.4
EF063605-1|ABN79916.1| 139|Homo sapiens heparan sulfate 3-O-sul... 31 2.4
EF063604-1|ABN79915.1| 139|Homo sapiens heparan sulfate 3-O-sul... 31 2.4
EF063603-1|ABN79914.1| 139|Homo sapiens heparan sulfate 3-O-sul... 31 2.4
EF063602-1|ABN79913.1| 139|Homo sapiens heparan sulfate 3-O-sul... 31 2.4
EF063601-1|ABN79912.1| 139|Homo sapiens heparan sulfate 3-O-sul... 31 2.4
AL834283-1|CAD38957.1| 335|Homo sapiens hypothetical protein pr... 31 2.4
AF105378-1|AAD30210.2| 456|Homo sapiens heparan sulfate 3-O-sul... 31 2.4
>EF063608-1|ABN79919.1| 139|Homo sapiens heparan sulfate
3-O-sulfotransferase 4 protein.
Length = 139
Score = 31.5 bits (68), Expect = 2.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 487 LPETPKYFICIRITKRKHSEKKEIRVLAVTSRDLSRNILKIT 612
+ +TP YF+ KR HS K+I+++ V ++R I T
Sbjct: 79 MEKTPSYFVTNEAPKRIHSMAKDIKLIVVVRNPVTRAISDYT 120
>EF063607-1|ABN79918.1| 139|Homo sapiens heparan sulfate
3-O-sulfotransferase 4 protein.
Length = 139
Score = 31.5 bits (68), Expect = 2.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 487 LPETPKYFICIRITKRKHSEKKEIRVLAVTSRDLSRNILKIT 612
+ +TP YF+ KR HS K+I+++ V ++R I T
Sbjct: 79 MEKTPSYFVTNEAPKRIHSMAKDIKLIVVVRNPVTRAISDYT 120
>EF063606-1|ABN79917.1| 139|Homo sapiens heparan sulfate
3-O-sulfotransferase 4 protein.
Length = 139
Score = 31.5 bits (68), Expect = 2.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 487 LPETPKYFICIRITKRKHSEKKEIRVLAVTSRDLSRNILKIT 612
+ +TP YF+ KR HS K+I+++ V ++R I T
Sbjct: 79 MEKTPSYFVTNEAPKRIHSMAKDIKLIVVVRNPVTRAISDYT 120
>EF063605-1|ABN79916.1| 139|Homo sapiens heparan sulfate
3-O-sulfotransferase 4 protein.
Length = 139
Score = 31.5 bits (68), Expect = 2.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 487 LPETPKYFICIRITKRKHSEKKEIRVLAVTSRDLSRNILKIT 612
+ +TP YF+ KR HS K+I+++ V ++R I T
Sbjct: 79 MEKTPSYFVTNEAPKRIHSMAKDIKLIVVVRNPVTRAISDYT 120
>EF063604-1|ABN79915.1| 139|Homo sapiens heparan sulfate
3-O-sulfotransferase 4 protein.
Length = 139
Score = 31.5 bits (68), Expect = 2.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 487 LPETPKYFICIRITKRKHSEKKEIRVLAVTSRDLSRNILKIT 612
+ +TP YF+ KR HS K+I+++ V ++R I T
Sbjct: 79 MEKTPSYFVTNEAPKRIHSMAKDIKLIVVVRNPVTRAISDYT 120
>EF063603-1|ABN79914.1| 139|Homo sapiens heparan sulfate
3-O-sulfotransferase 4 protein.
Length = 139
Score = 31.5 bits (68), Expect = 2.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 487 LPETPKYFICIRITKRKHSEKKEIRVLAVTSRDLSRNILKIT 612
+ +TP YF+ KR HS K+I+++ V ++R I T
Sbjct: 79 MEKTPSYFVTNEAPKRIHSMAKDIKLIVVVRNPVTRAISDYT 120
>EF063602-1|ABN79913.1| 139|Homo sapiens heparan sulfate
3-O-sulfotransferase 4 protein.
Length = 139
Score = 31.5 bits (68), Expect = 2.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 487 LPETPKYFICIRITKRKHSEKKEIRVLAVTSRDLSRNILKIT 612
+ +TP YF+ KR HS K+I+++ V ++R I T
Sbjct: 79 MEKTPSYFVTNEAPKRIHSMAKDIKLIVVVRNPVTRAISDYT 120
>EF063601-1|ABN79912.1| 139|Homo sapiens heparan sulfate
3-O-sulfotransferase 4 protein.
Length = 139
Score = 31.5 bits (68), Expect = 2.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 487 LPETPKYFICIRITKRKHSEKKEIRVLAVTSRDLSRNILKIT 612
+ +TP YF+ KR HS K+I+++ V ++R I T
Sbjct: 79 MEKTPSYFVTNEAPKRIHSMAKDIKLIVVVRNPVTRAISDYT 120
>AL834283-1|CAD38957.1| 335|Homo sapiens hypothetical protein
protein.
Length = 335
Score = 31.5 bits (68), Expect = 2.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 487 LPETPKYFICIRITKRKHSEKKEIRVLAVTSRDLSRNILKIT 612
+ +TP YF+ KR HS K+I+++ V ++R I T
Sbjct: 137 MEKTPSYFVTNEAPKRIHSMAKDIKLIVVVRNPVTRAISDYT 178
>AF105378-1|AAD30210.2| 456|Homo sapiens heparan sulfate
3-O-sulfotransferase-4 protein.
Length = 456
Score = 31.5 bits (68), Expect = 2.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 487 LPETPKYFICIRITKRKHSEKKEIRVLAVTSRDLSRNILKIT 612
+ +TP YF+ KR HS K+I+++ V ++R I T
Sbjct: 258 MEKTPSYFVTNEAPKRIHSMAKDIKLIVVVRNPVTRAISDYT 299
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,066,587
Number of Sequences: 237096
Number of extensions: 1386739
Number of successful extensions: 2768
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2768
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -