Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8p16
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.15
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 28 1.1
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 28 1.1
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa... 27 1.8
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c... 26 4.3
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 26 5.6
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 25 7.5
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 25 9.9
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy... 25 9.9
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos... 25 9.9
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 9.9
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 31.1 bits (67), Expect = 0.15
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +2
Query: 401 IKRNNKLISKDNKLIANKKRALSHHNGPEITSAFGSVNPDSSFLEINTFDCHDGDDSTNS 580
+K N+ ++ L+AN K + + + S S +S E + FD D D + N+
Sbjct: 364 VKENSTRPYVNSHLVANDKITATPFHSEAVVSPLQSNIRNSDIAEFDEFDIDDADFTFNT 423
Query: 581 KVPVHSNDDEG 613
P+ ND+ G
Sbjct: 424 TDPI--NDESG 432
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +2
Query: 296 QARKAQDQLLQLVKDPLFTLSKLKFSKTDNIDVLAIKRNNKLISKD 433
Q+RKA+DQLL+ + D ++ + +K + I + + RN+ L KD
Sbjct: 32 QSRKAEDQLLRQIFDDQ-NIAVNQITKRNGIQGVGLFRNHFLSDKD 76
>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
Nse6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 522
Score = 28.3 bits (60), Expect = 1.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 203 QINVCIHNWFLIISYLNSNS 144
++ CIH F+++ YLN+NS
Sbjct: 446 EVKDCIHRLFMVLYYLNTNS 465
>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -3
Query: 441 NLLSFEINLLLRLIANTSMLSVLLNFNFDKVNNGSL 334
N+ SFE NLL N + L N+NF+ VN SL
Sbjct: 96 NVGSFESNLLDDCFKNRIEYAKLQNYNFEFVNVSSL 131
>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 395 LAIKRNNKLISKDNKLIANKKRALSHHNG 481
L + N K SK N++I +L+H+NG
Sbjct: 72 LLLSSNQKSTSKSNQMIKLLNNSLAHNNG 100
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 152 SSDRKLSETNYEYKHLFGELVGSTNQ--SAHTSLCWECIK 265
SSD+ + + YK+++G+L+ S TS+C E ++
Sbjct: 382 SSDKDVKQLFSNYKNIYGDLIKREGGQISLKTSMCLEILR 421
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -3
Query: 375 LLNFNFDKVNNGSLTNWSS*SC 310
LL+F+F+KV + SLTN S +C
Sbjct: 68 LLDFDFEKVCSVSLTNLSVYAC 89
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 620 FHYPHHHYCEQVLWNLYCHLRHDSQMY*FPKNLNLD 513
F ++HYC ++LW H +H+ F + N D
Sbjct: 232 FEGHYNHYCRKILWP-SLHYQHNEIFSFFHEESNWD 266
>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 281 RDFKGQARKAQDQLLQLVKDPL 346
R F G A KAQD+L Q+ D L
Sbjct: 312 RKFPGNADKAQDELHQVAFDAL 333
>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
Ups1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 74 KRIHLETKMALDSFNNLRRSLCGGCLSSDRKLSET 178
KR+H E D N+R++ CG ++S R +SET
Sbjct: 37 KRVHEE--QLRDKLKNVRKTYCGLIVTSQR-VSET 68
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/67 (25%), Positives = 33/67 (49%)
Frame = +2
Query: 410 NNKLISKDNKLIANKKRALSHHNGPEITSAFGSVNPDSSFLEINTFDCHDGDDSTNSKVP 589
++ ++SK N+++++ + L HN +T G +N S++ T+ N
Sbjct: 1263 DSAIVSKLNQILSDFRDDLLEHNVRRVTIVGGRIN-KSAYPSYYTYRVSAEQKDGNL--- 1318
Query: 590 VHSNDDE 610
VH N+DE
Sbjct: 1319 VHYNEDE 1325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,568
Number of Sequences: 5004
Number of extensions: 55248
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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